Shaping bacterial population behavior through computer-interfaced control of individual cells

Biased partitioning of the multidrug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity

(2017) Tobias Bergmiller et al.   SCIENCE

Electronic control of gene expression and cell behaviour in Escherichia coli through redox signalling

(2017) Tanya Tschirhart et al.   Nature Communications

Challenges in microbial ecology: building predictive understanding of community function and dynamics

(2016) Stefanie Widder et al.   ISME Journal

Synchronous long-term oscillations in a synthetic gene circuit

(2016) Laurent Potvin-Trottier et al.   NATURE

Automated optogenetic feedback control for precise and robust regulation of gene expression and cell growth

(2016) Andreas Milias-Argeitis et al.   Nature Communications

A functional perspective on phenotypic heterogeneity in microorganisms

(2015) Martin Ackermann   NATURE REVIEWS MICROBIOLOGY

Iterative experiment design guides the characterization of a light-inducible gene expression circuit

(2015) Jakob Ruess et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In Vivo Real-Time Control of Gene Expression: A Comparative Analysis of Feedback Control Strategies in Yeast

(2015) Gianfranco Fiore et al.   ACS Synthetic Biology

Real-time optogenetic control of intracellular protein concentration in microbial cell cultures

(2014) Justin Melendez et al.   Integrative Biology

Scalable inference of heterogeneous reaction kinetics from pooled single-cell recordings

(2014) Christoph Zechner et al.   NATURE METHODS

Characterizing bacterial gene circuit dynamics with optically programmed gene expression signals

(2014) Evan J Olson et al.   NATURE METHODS

Bacterial solutions to multicellularity: a tale of biofilms, filaments and fruiting bodies

(2014) Dennis Claessen et al.   NATURE REVIEWS MICROBIOLOGY

Refactoring and Optimization of Light-Switchable Escherichia coli Two-Component Systems

(2014) Sebastian R. Schmidl et al.   ACS Synthetic Biology

In-Vivo Real-Time Control of Protein Expression from Endogenous and Synthetic Gene Networks

(2014) Filippo Menolascina et al.   PLoS Computational Biology

Programming Microbes Using Pulse Width Modulation of Optical Signals

(2013) Eric A. Davidson et al.   JOURNAL OF MOLECULAR BIOLOGY

The Innate Growth Bistability and Fitness Landscapes of Antibiotic-Resistant Bacteria

(2013) J. B. Deris et al.   SCIENCE

Bacterial Quorum Sensing: Its Role in Virulence and Possibilities for Its Control

(2013) S. T. Rutherford et al.   Cold Spring Harbor Perspectives in Medicine

Engineering multicellular traits in synthetic microbial populations

(2012) John S Chuang   CURRENT OPINION IN CHEMICAL BIOLOGY

Signaling-mediated bacterial persister formation

(2012) Nicole M Vega et al.   Nature Chemical Biology

A multispectral optical illumination system with precise spatiotemporal control for the manipulation of optogenetic reagents

(2012) Jeffrey N Stirman et al.   Nature Protocols

Long-term model predictive control of gene expression at the population and single-cell levels

(2012) J. Uhlendorf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Extracellular signaling and multicellularity in Bacillus subtilis

(2011) Elizabeth Anne Shank et al.   CURRENT OPINION IN MICROBIOLOGY

Role of persister cells in chronic infections: clinical relevance and perspectives on anti-persister therapies

(2011) M. Fauvart et al.   JOURNAL OF MEDICAL MICROBIOLOGY

In silico feedback for in vivo regulation of a gene expression circuit

(2011) Andreas Milias-Argeitis et al.   NATURE BIOTECHNOLOGY

Light-based feedback for controlling intracellular signaling dynamics

(2011) Jared E Toettcher et al.   NATURE METHODS

Structure and Evolution of Streptomyces Interaction Networks in Soil and In Silico

(2011) Kalin Vetsigian et al.   PLOS BIOLOGY

Engineering Static and Dynamic Control of Synthetic Pathways

(2010) William J. Holtz et al.   CELL

Robust Growth of Escherichia coli

(2010) Ping Wang et al.   CURRENT BIOLOGY

Dynamics in the mixed microbial concourse

(2010) E. H. Wintermute et al.   GENES & DEVELOPMENT

Five hard truths for synthetic biology

(2010) Roberta Kwok   NATURE

A synchronized quorum of genetic clocks

(2010) Tal Danino et al.   NATURE

Interspecies Chemical Communication in Bacterial Development

(2009) Paul D. Straight et al.   Annual Review of Microbiology

The role of antibiotics and antibiotic resistance in nature

(2009) Rustam I. Aminov   ENVIRONMENTAL MICROBIOLOGY

Individuality in Bacteria

(2008) Carla J. Davidson et al.   Annual Review of Genetics

Control of cell fate by the formation of an architecturally complex bacterial community

(2008) H. Vlamakis et al.   GENES & DEVELOPMENT

A fast, robust and tunable synthetic gene oscillator

(2008) Jesse Stricker et al.   NATURE

Self-destructive cooperation mediated by phenotypic noise

(2008) Martin Ackermann et al.   NATURE

Inter-kingdom signalling: communication between bacteria and their hosts

(2008) David T. Hughes et al.   NATURE REVIEWS MICROBIOLOGY

Design principles of biochemical oscillators

(2008) Béla Novák et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Cyanobacteriochrome CcaS is the green light receptor that induces the expression of phycobilisome linker protein

(2008) Y. Hirose et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA