Dysfunction of PLA2G6 and CYP2C44-associated network signals imminent carcinogenesis from chronic inflammation to hepatocellular carcinoma

Personalized characterization of diseases using sample-specific networks

(2016) Xiaoping Liu et al.   NUCLEIC ACIDS RESEARCH

Part mutual information for quantifying direct associations in networks

(2016) Juan Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Discovering a critical transition state from nonalcoholic hepatosteatosis to nonalcoholic steatohepatitis by lipidomics and dynamical network biomarkers

(2016) Rina Sa et al.   Journal of Molecular Cell Biology

Big-data-based edge biomarkers: study on dynamical drug sensitivity and resistance in individuals

(2015) Tao Zeng et al.   BRIEFINGS IN BIOINFORMATICS

Broad Anti-tumor Activity of a Small Molecule that Selectively Targets the Warburg Effect and Lipogenesis

(2015) Colin A. Flaveny et al.   CANCER CELL

Diagnosing phenotypes of single-sample individuals by edge biomarkers

(2015) Wanwei Zhang et al.   Journal of Molecular Cell Biology

Identifying early-warning signals of critical transitions with strong noise by dynamical network markers

(2015) Rui Liu et al.   Scientific Reports

A Proteome-Scale Map of the Human Interactome Network

(2014) Thomas Rolland et al.   CELL

Cancer-related inflammation and treatment effectiveness

(2014) Connie I Diakos et al.   LANCET ONCOLOGY

MCentridFS: a tool for identifying module biomarkers for multi-phenotypes from high-throughput data

(2014) Zhenshu Wen et al.   Molecular BioSystems

Conditional mutual inclusive information enables accurate quantification of associations in gene regulatory networks

(2014) Xiujun Zhang et al.   NUCLEIC ACIDS RESEARCH

Transient receptor potential (TRP) channels, promising potential diagnostic and therapeutic tools for cancer

(2014) Jianpeng Chen et al.   BioScience Trends

Large-scale integrative network-based analysis identifies common pathways disrupted by copy number alterations across cancers

(2013) Tae Hwang et al.   BMC GENOMICS

Detecting tissue-specific early warning signals for complex diseases based on dynamical network biomarkers: study of type 2 diabetes by cross-tissue analysis

(2013) M. Li et al.   BRIEFINGS IN BIOINFORMATICS

Drug-Induced Liver Injury: The Role of Drug Metabolism and Transport

(2013) Alberto Corsini et al.   JOURNAL OF CLINICAL PHARMACOLOGY

Quantitative Proteomic Analysis Identified Paraoxonase 1 as a Novel Serum Biomarker for Microvascular Invasion in Hepatocellular Carcinoma

(2013) Cheng Huang et al.   JOURNAL OF PROTEOME RESEARCH

Early Diagnosis of Complex Diseases by Molecular Biomarkers, Network Biomarkers, and Dynamical Network Biomarkers

(2013) Rui Liu et al.   MEDICINAL RESEARCH REVIEWS

Integrative approaches for finding modular structure in biological networks

(2013) Koyel Mitra et al.   NATURE REVIEWS GENETICS

NARROMI: a noise and redundancy reduction technique improves accuracy of gene regulatory network inference

(2012) Xiujun Zhang et al.   BIOINFORMATICS

c-Myc Is a Universal Amplifier of Expressed Genes in Lymphocytes and Embryonic Stem Cells

(2012) Zuqin Nie et al.   CELL

Transcriptional Amplification in Tumor Cells with Elevated c-Myc

(2012) Charles Y. Lin et al.   CELL

Xenobiotic-induced liver injury and fibrosis

(2012) Christoph H Österreicher et al.   Expert Opinion on Drug Metabolism & Toxicology

The effects of hepatitis B virus integration into the genomes of hepatocellular carcinoma patients

(2012) Z. Jiang et al.   GENOME RESEARCH

Coexpression network analysis in chronic hepatitis B and C hepatic lesions reveals distinct patterns of disease progression to hepatocellular carcinoma

(2012) Danning He et al.   Journal of Molecular Cell Biology

Detecting early-warning signals for sudden deterioration of complex diseases by dynamical network biomarkers

(2012) Luonan Chen et al.   Scientific Reports

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

Targeting cancer metabolism: a therapeutic window opens

(2011) Matthew G. Vander Heiden   NATURE REVIEWS DRUG DISCOVERY

NOA: a novel Network Ontology Analysis method

(2011) Jiguang Wang et al.   NUCLEIC ACIDS RESEARCH

Regulation of inflammation in cancer by eicosanoids

(2011) Emily R. Greene et al.   PROSTAGLANDINS & OTHER LIPID MEDIATORS

Surgicopathological classification of hepatic space-occupying lesions: A single-center experience with literature review

(2011) Wen-Ming Cong   WORLD JOURNAL OF GASTROENTEROLOGY

Cytochrome P450-derived eicosanoids: the neglected pathway in cancer

(2010) Dipak Panigrahy et al.   CANCER AND METASTASIS REVIEWS

Proteomic mining in the dysplastic liver of WHV/c-myc mice - insights and indicators for early hepatocarcinogenesis

(2010) Yansheng Liu et al.   FEBS Journal

The Anti-tumorigenic Properties of Peroxisomal Proliferator-activated Receptor α Are Arachidonic Acid Epoxygenase-mediated

(2010) Ambra Pozzi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A Critical Role for LTA4H in Limiting Chronic Pulmonary Neutrophilic Inflammation

(2010) R. J. Snelgrove et al.   SCIENCE

Central Role of c-Myc during Malignant Conversion in Human Hepatocarcinogenesis

(2009) P. Kaposi-Novak et al.   CANCER RESEARCH

Understanding the Warburg Effect: The Metabolic Requirements of Cell Proliferation

(2009) M. G. Vander Heiden et al.   SCIENCE

New aspects of the role of hydroxyeicosatetraenoic acids in cell growth and cancer development

(2008) Juan J. Moreno   BIOCHEMICAL PHARMACOLOGY

Inflammation and cancer: The oncogene-driven connection

(2008) Maria Grazia Borrello et al.   CANCER LETTERS

Mammalian patatin domain containing proteins: a family with diverse lipolytic activities involved in multiple biological functions

(2008) Petra C. Kienesberger et al.   JOURNAL OF LIPID RESEARCH

Comparative Proteomic Phenotyping of Cell Lines and Primary Cells to Assess Preservation of Cell Type-specific Functions

(2008) Cuiping Pan et al.   MOLECULAR & CELLULAR PROTEOMICS

Cancer-related inflammation

(2008) Alberto Mantovani et al.   NATURE

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Role of transport proteins in drug discovery and development: a pharmaceutical perspective

(2008) A. Ayrton et al.   XENOBIOTICA