Next-generation sequencing to identify candidate genes and develop diagnostic markers for a novel Phytophthora resistance gene, RpsHC18, in soybean

Genotyping-by-sequencing approaches to characterize crop genomes: choosing the right tool for the right application

(2017) Armin Scheben et al.   PLANT BIOTECHNOLOGY JOURNAL

QTL-seq approach identified genomic regions and diagnostic markers for rust and late leaf spot resistance in groundnut (Arachis hypogaea L.)

(2017) Manish K. Pandey et al.   PLANT BIOTECHNOLOGY JOURNAL

Genetic analysis of Phytophthora sojae populations in Fujian, China

(2017) M. Wu et al.   PLANT PATHOLOGY

Mapping of powdery mildew resistance genes in melon ( Cucumis melo L.) by bulked segregant analysis

(2017) Bing Li et al.   SCIENTIA HORTICULTURAE

Fine mapping of a Phytophthora-resistance gene RpsWY in soybean (Glycine max L.) by high-throughput genome-wide sequencing

(2017) Yanbo Cheng et al.   THEORETICAL AND APPLIED GENETICS

Genetic mapping and development of co-segregating markers of RpsQ, which provides resistance to Phytophthora sojae in soybean

(2017) Yinping Li et al.   THEORETICAL AND APPLIED GENETICS

A Novel Phytophthora sojae Resistance Rps12 Gene Mapped to a Genomic Region That Contains Several Rps Genes

(2017) Dipak K. Sahoo et al.   PLoS One

Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01

(2016) Qijian Song et al.   BMC GENOMICS

Pathotypes and metalaxyl sensitivity of Phytophthora sojae and their distribution in Heilongjiang, China 2011–2015

(2016) Miao Tian et al.   JOURNAL OF GENERAL PLANT PATHOLOGY

Bulked sample analysis in genetics, genomics and crop improvement

(2016) Cheng Zou et al.   PLANT BIOTECHNOLOGY JOURNAL

QTL-seq for rapid identification of candidate genes for 100-seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea

(2016) Vikas K. Singh et al.   PLANT BIOTECHNOLOGY JOURNAL

Population Structure Among and Within Iowa, Missouri, Ohio, and South Dakota Populations ofPhytophthora sojae

(2016) S. Stewart et al.   PLANT DISEASE

Large-Scale Analyses of Angiosperm Nucleotide-Binding Site-Leucine-Rich Repeat Genes Reveal Three Anciently Diverged Classes with Distinct Evolutionary Patterns

(2016) Zhu-Qing Shao et al.   PLANT PHYSIOLOGY

Fine mapping and candidate gene analysis of two loci conferring resistance to Phytophthora sojae in soybean

(2016) Linghong Li et al.   THEORETICAL AND APPLIED GENETICS

Races ofPhytophthora sojaein Ontario, Canada, 2010–2012

(2015) Allen G. Xue et al.   CANADIAN JOURNAL OF PLANT PATHOLOGY

Deploying QTL-seq for rapid delineation of a potential candidate gene underlying major trait-associated QTL in chickpea

(2015) S. Das et al.   DNA RESEARCH

Development and validation of SNP-based functional codominant markers for two major disease resistance genes in rice (O. sativa L.)

(2015) G. Ramkumar et al.   MOLECULAR BREEDING

Precise identification of two wheat–Thinopyrum intermedium substitutions reveals the compensation and rearrangement between wheat and Thinopyrum chromosomes

(2015) Guangrong Li et al.   MOLECULAR BREEDING

Next-generation sequencing for identification of candidate genes forFusariumwilt and sterility mosaic disease in pigeonpea (Cajanus cajan)

(2015) Vikas K. Singh et al.   PLANT BIOTECHNOLOGY JOURNAL

Identification and molecular mapping of Rps11, a novel gene conferring resistance to Phytophthora sojae in soybean

(2015) Jieqing Ping et al.   THEORETICAL AND APPLIED GENETICS

Rapid and reliable identification of tomato fruit weight and locule number loci by QTL-seq

(2015) Eudald Illa-Berenguer et al.   THEORETICAL AND APPLIED GENETICS

The Top 10 oomycete pathogens in molecular plant pathology

(2014) Sophien Kamoun et al.   MOLECULAR PLANT PATHOLOGY

Genetic analysis and fine mapping of RpsJS, a novel resistance gene to Phytophthora sojae in soybean [Glycine max (L.) Merr.]

(2014) Jutao Sun et al.   THEORETICAL AND APPLIED GENETICS

QTL-seq identifies an early flowering QTL located near Flowering Locus T in cucumber

(2014) Hongfeng Lu et al.   THEORETICAL AND APPLIED GENETICS

Characterization of Phytophthora resistance in soybean cultivars/lines bred in Henan province

(2013) Jiqing Zhang et al.   EUPHYTICA

Plant Nucleotide Binding Site–Leucine-Rich Repeat (NBS-LRR) Genes: Active Guardians in Host Defense Responses

(2013) Daniela Marone et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Pathotype and Genetic Shifts in a Population of Phytophthora sojae Under Soybean Cultivar Rotation

(2013) S. Stewart et al.   PLANT DISEASE

QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

(2013) Hiroki Takagi et al.   PLANT JOURNAL

Identification and Candidate Gene Analysis of a Novel Phytophthora Resistance Gene Rps10 in a Chinese Soybean Cultivar

(2013) Jiqing Zhang et al.   PLoS One

Molecular mapping of two genes conferring resistance to Phytophthora sojae in a soybean landrace PI 567139B

(2013) Feng Lin et al.   THEORETICAL AND APPLIED GENETICS

Genetic characterization and fine mapping of the novel Phytophthora resistance gene in a Chinese soybean cultivar

(2013) Jiqing Zhang et al.   THEORETICAL AND APPLIED GENETICS

Pathogenic diversity of Phytophthora sojae and breeding strategies to develop Phytophthora-resistant soybeans

(2012) Takuma Sugimoto et al.   BREEDING SCIENCE

Functional markers in wheat: current status and future prospects

(2012) Yanan Liu et al.   THEORETICAL AND APPLIED GENETICS

Identification, Genetic Analysis and Mapping of Resistance to Phytophthora sojae of Pm28 in Soybean

(2011) Xiao-ling WU et al.   Agricultural Sciences in China

Genetic analysis and identification of DNA markers linked to a novel Phytophthora sojae resistance gene in the Japanese soybean cultivar Waseshiroge

(2011) T. Sugimoto et al.   EUPHYTICA

Identification of candidate genes in rice for resistance to sheath blight disease by whole genome sequencing

(2011) James Silva et al.   THEORETICAL AND APPLIED GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Identification of a new fragrance allele in soybean and development of its functional marker

(2010) Ruangchai Juwattanasomran et al.   MOLECULAR BREEDING

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

Characterization and mapping of RpsYu25, a novel resistance gene to Phytophthora sojae

(2010) S. Sun et al.   PLANT BREEDING

Distribution, Pathotypes, and Metalaxyl Sensitivity of Phytophthora sojae from Heilongjiang and Fujian Provinces in China

(2010) Linkai Cui et al.   PLANT DISEASE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

SoyBase, the USDA-ARS soybean genetics and genomics database

(2009) David Grant et al.   NUCLEIC ACIDS RESEARCH

Races of Phytophthora sojae and Their Virulences on Soybean Cultivars in Heilongjiang, China

(2009) Shuzhen Zhang et al.   PLANT DISEASE

The soybean-Phytophthora resistance locus Rps1-k encompasses coiled coil-nucleotide binding-leucine rich repeat-like genes and repetitive sequences

(2008) Hongyu Gao et al.   BMC PLANT BIOLOGY

Two Adjacent Nucleotide-Binding Site-Leucine-Rich Repeat Class Genes Are Required to Confer Pikm-Specific Rice Blast Resistance

(2008) I. Ashikawa et al.   GENETICS

Pathogen corruption and site-directed recombination at a plant disease resistance gene cluster

(2008) E. D. Nagy et al.   GENOME RESEARCH

Identification of SSR markers linked to the Phytophthora resistance gene Rps1-d in soybean

(2007) T. Sugimoto et al.   PLANT BREEDING