Inference of Evolutionary Jumps in Large Phylogenies using Lévy Processes

Phenotypic Evolution: The Ongoing Synthesis

(2014) Stevan J. Arnold   AMERICAN NATURALIST

A Novel Bayesian Method for Inferring and Interpreting the Dynamics of Adaptive Landscapes from Phylogenetic Comparative Data

(2014) Josef C. Uyeda et al.   SYSTEMATIC BIOLOGY

A Linear-Time Algorithm for Gaussian and Non-Gaussian Trait Evolution Models

(2014) Lam si Tung Ho et al.   SYSTEMATIC BIOLOGY

Parallel adaptations to nectarivory in parrots, key innovations and the diversification of the Loriinae

(2014) Manuel Schweizer et al.   Ecology and Evolution

SURFACE: detecting convergent evolution from comparative data by fitting Ornstein-Uhlenbeck models with stepwise Akaike Information Criterion

(2013) Travis Ingram et al.   Methods in Ecology and Evolution

Phylogenetic Analysis Using Lévy Processes: Finding Jumps in the Evolution of Continuous Traits

(2012) Michael J. Landis et al.   SYSTEMATIC BIOLOGY

Diversitree: comparative phylogenetic analyses of diversification in R

(2012) Richard G. FitzJohn   Methods in Ecology and Evolution

Fast likelihood calculations for comparative analyses

(2012) Robert P. Freckleton   Methods in Ecology and Evolution

FITTING MODELS OF CONTINUOUS TRAIT EVOLUTION TO INCOMPLETELY SAMPLED COMPARATIVE DATA USING APPROXIMATE BAYESIAN COMPUTATION

(2011) Graham J. Slater et al.   EVOLUTION

A NOVEL COMPARATIVE METHOD FOR IDENTIFYING SHIFTS IN THE RATE OF CHARACTER EVOLUTION ON TREES

(2011) Jonathan M. Eastman et al.   EVOLUTION

Macroevolutionary patterns in the diversification of parrots: effects of climate change, geological events and key innovations

(2011) Manuel Schweizer et al.   JOURNAL OF BIOGEOGRAPHY

The evolution of gene expression levels in mammalian organs

(2011) David Brawand et al.   NATURE

The million-year wait for macroevolutionary bursts

(2011) J. C. Uyeda et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Simulating Trees with a Fixed Number of Extant Species

(2011) Tanja Stadler   SYSTEMATIC BIOLOGY

Adaptive Radiation, Ecological Opportunity, and Evolutionary Determinism

(2010) Jonathan B. Losos   AMERICAN NATURALIST

ECOLOGICAL OPPORTUNITY AND THE RATE OF MORPHOLOGICAL EVOLUTION IN THE DIVERSIFICATION OF GREATER ANTILLEAN ANOLES

(2010) D. Luke Mahler et al.   EVOLUTION

SIZE-CORRECTION AND PRINCIPAL COMPONENTS FOR INTERSPECIFIC COMPARATIVE STUDIES

(2009) Liam J. Revell   EVOLUTION

BODY SIZE DIVERSIFICATION INANOLIS: NOVEL ENVIRONMENT AND ISLAND EFFECTS

(2009) Gavin H. Thomas et al.   EVOLUTION

Optimization of gene expression by natural selection

(2009) T. Bedford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DETECTION OF “PUNCTUATED EQUILIBRIUM” BY BAYESIAN ESTIMATION OF SPECIATION AND EXTINCTION RATES, ANCESTRAL CHARACTER STATES, AND RATES OF ANAGENETIC AND CLADOGENETIC EVOLUTION ON A MOLECULAR PHYLOGENY

(2008) Folmer Bokma   EVOLUTION