Likelihood of Tree Topologies with Fossils and Diversification Rate Estimation

Diversification histories for North American and Eurasian carnivorans

(2016) John A. Finarelli et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Total-Evidence Dating under the Fossilized Birth–Death Process

(2015) Chi Zhang et al.   SYSTEMATIC BIOLOGY

Models for the Rise of the Dinosaurs

(2014) Michael J. Benton et al.   CURRENT BIOLOGY

Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees

(2014) Daniel L. Rabosky   PLoS One

The fossilized birth-death process for coherent calibration of divergence-time estimates

(2014) T. A. Heath et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Do habitat shifts drive diversification in teleost fishes? An example from the pufferfishes (Tetraodontidae)

(2013) F. Santini et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Provincialization of terrestrial faunas following the end-Permian mass extinction

(2013) C. A. Sidor et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dating Phylogenies with Sequentially Sampled Tips

(2013) Tanja Stadler et al.   SYSTEMATIC BIOLOGY

Birth–death models and coalescent point processes: The shape and probability of reconstructed phylogenies

(2013) Amaury Lambert et al.   THEORETICAL POPULATION BIOLOGY

A stochastic rate-calibrated method for time-scaling phylogenies of fossil taxa

(2013) David W. Bapst   Methods in Ecology and Evolution

Incorporating phylogenetic uncertainty on phylogeny-based palaeontological dating and the timing of turtle diversification

(2012) Juliana Sterli et al.   CLADISTICS

Interrelationships of basal synapsids: cranial and postcranial morphological partitions suggest different topologies

(2012) Roger B. J. Benson   JOURNAL OF SYSTEMATIC PALAEONTOLOGY

The generalized time variable reconstructed birth–death process

(2012) Nathaniel Hallinan   JOURNAL OF THEORETICAL BIOLOGY

A Total-Evidence Approach to Dating with Fossils, Applied to the Early Radiation of the Hymenoptera

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Inferring Speciation and Extinction Rates under Different Sampling Schemes

(2011) S. Hohna et al.   MOLECULAR BIOLOGY AND EVOLUTION

Amniotes through major biological crises: faunal turnover among Parareptiles and the end-Permian mass extinction

(2011) MARCELLO RUTA et al.   PALAEONTOLOGY

Divergence Time Estimation Using Fossils as Terminal Taxa and the Origins of Lissamphibia

(2011) R. Alexander Pyron   SYSTEMATIC BIOLOGY

Assessing Confidence Intervals for Stratigraphic Ranges of Higher Taxa: The Case of Lissamphibia

(2010) David Marjanović et al.   ACTA PALAEONTOLOGICA POLONICA

Sampling-through-time in birth–death trees

(2010) Tanja Stadler   JOURNAL OF THEORETICAL BIOLOGY

Computational challenges in the analysis of ancient DNA

(2010) Kay Prüfer et al.   GENOME BIOLOGY

Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates

(2009) M. E. Alfaro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Volcanism, Mass Extinction, and Carbon Isotope Fluctuations in the Middle Permian of China

(2009) P. B. Wignall et al.   SCIENCE

A Method for Investigating Relative Timing Information on Phylogenetic Trees

(2009) Daniel Ford et al.   SYSTEMATIC BIOLOGY

Estimating primate divergence times by using conditioned birth-and-death processes

(2009) Richard D. Wilkinson et al.   THEORETICAL POPULATION BIOLOGY

A Simple Method for Bracketing Absolute Divergence Times on Molecular Phylogenies Using Multiple Fossil Calibration Points

(2008) Charles R. Marshall   AMERICAN NATURALIST

The conditioned reconstructed process

(2008) Tanja Gernhard   JOURNAL OF THEORETICAL BIOLOGY