Feasibility of occurrence of different types of protonated base pairs in RNA: a quantum chemical study
Published 2014 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Feasibility of occurrence of different types of protonated base pairs in RNA: a quantum chemical study
Authors
Keywords
-
Journal
PHYSICAL CHEMISTRY CHEMICAL PHYSICS
Volume 16, Issue 34, Pages 18383-18396
Publisher
Royal Society of Chemistry (RSC)
Online
2014-07-14
DOI
10.1039/c4cp02541e
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Why Does Substitution of Thymine by 6-Ethynylpyridone Increase the Thermostability of DNA Double Helices?
- (2014) Antarip Halder et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Sequence and conformation effects on ionization potential and charge distribution of homo-nucleobase stacks using M06-2X hybrid density functional theory calculations
- (2013) Marianne Rooman et al. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
- Design and Applications of Noncanonical DNA Base Pairs
- (2013) A. K. Jissy et al. Journal of Physical Chemistry Letters
- Base-Pairing Energies of Proton-Bound Heterodimers of Cytosine and Modified Cytosines: Implications for the Stability of DNA i-Motif Conformations
- (2013) Bo Yang et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Face-to-Face Stacks of Trinuclear Gold(I) Trihalides with Benzene, Hexafluorobenzene, and Borazine: Impact of Aromaticity on Stacking Interactions
- (2012) Athanassios C. Tsipis et al. INORGANIC CHEMISTRY
- Influence of divalent magnesium ion on DNA: molecular dynamics simulation studies
- (2012) Sanchita Mukherjee et al. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
- Calculated pKa’s of the DNA Base Radical Ions
- (2012) David M. Close JOURNAL OF PHYSICAL CHEMISTRY A
- SR1—a small RNA with two remarkably conserved functions
- (2012) Matthias Gimpel et al. NUCLEIC ACIDS RESEARCH
- Mechanistic insights into editing-site specificity of ADARs
- (2012) A. Kuttan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- HD-RNAS: An Automated Hierarchical Database of RNA Structures
- (2012) Shubhra Sankar Ray et al. Frontiers in Genetics
- Charged Nucleobases and Their Potential for RNA Catalysis
- (2011) Jennifer L. Wilcox et al. ACCOUNTS OF CHEMICAL RESEARCH
- Taking the Aromaticity out of Aromatic Interactions
- (2011) Jacob W. G. Bloom et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Dispersion Interactions with Density-Functional Theory: Benchmarking Semiempirical and Interatomic Pairwise Corrected Density Functionals
- (2011) Noa Marom et al. Journal of Chemical Theory and Computation
- Protonation of Base Pairs in RNA: Context Analysis and Quantum Chemical Investigations of Their Geometries and Stabilities
- (2011) Mohit Chawla et al. JOURNAL OF PHYSICAL CHEMISTRY B
- A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu
- (2010) Stefan Grimme et al. JOURNAL OF CHEMICAL PHYSICS
- On the Role of the cis Hoogsteen:Sugar-Edge Family of Base Pairs in Platforms and Triplets—Quantum Chemical Insights into RNA Structural Biology
- (2010) Purshotam Sharma et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Designing Molecular Switches Based on DNA-Base Mispairing
- (2010) A. K. Jissy et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Protonation States of the Key Active Site Residues and Structural Dynamics of theglmSRiboswitch As Revealed by Molecular Dynamics
- (2010) Pavel Banáš et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Extensive Molecular Dynamics Simulations Showing That Canonical G8 and Protonated A38H+Forms Are Most Consistent with Crystal Structures of Hairpin Ribozyme
- (2010) Vojtěch Mlýnský et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Minimum-Energy Path for a U6 RNA Conformational Change Involving Protonation, Base-Pair Rearrangement and Base Flipping
- (2009) Vincenzo Venditti et al. JOURNAL OF MOLECULAR BIOLOGY
- Gas-Phase Thermochemical Properties of the Damaged BaseO6-Methylguanine versus Adenine and Guanine
- (2009) Anna Zhachkina et al. JOURNAL OF ORGANIC CHEMISTRY
- Trans Hoogsteen/Sugar Edge Base Pairing in RNA. Structures, Energies, and Stabilities from Quantum Chemical Calculations
- (2009) Arnošt Mládek et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Frequency and Effect of the Binding of Mg2+, Mn2+, and Co2+Ions on the Guanine Base in Watson−Crick and Reverse Watson−Crick Base Pairs
- (2009) Romina Oliva et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Ionization Energies of Aqueous Nucleic Acids: Photoelectron Spectroscopy of Pyrimidine Nucleosides and ab Initio Calculations
- (2009) Petr Slavíček et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Gas-Phase Thermochemical Properties of Pyrimidine Nucleobases
- (2008) Min Liu et al. JOURNAL OF ORGANIC CHEMISTRY
- Gas-Phase Protonation Thermochemistry of Adenosine
- (2008) David Touboul et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Calculation of pKaValues of Nucleobases and the Guanine Oxidation Products Guanidinohydantoin and Spiroiminodihydantoin using Density Functional Theory and a Polarizable Continuum Model
- (2008) Vincenzo Verdolino et al. JOURNAL OF PHYSICAL CHEMISTRY B
- An Exploration of Mechanisms for the Transformation of 8-Oxoguanine to Guanidinohydantoin and Spiroiminodihydantoin by Density Functional Theory
- (2008) Barbara H. Munk et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Stepwise chromatin remodelling by a cascade of transcription initiation of non-coding RNAs
- (2008) Kouji Hirota et al. NATURE
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started