miREFRWR: a novel disease-related microRNA-environmental factor interactions prediction method

Prioritizing candidate disease-related long non-coding RNAs by walking on the heterogeneous lncRNA and disease network

(2015) Meng Zhou et al.   Molecular BioSystems

Predictive genomics: A cancer hallmark network framework for predicting tumor clinical phenotypes using genome sequencing data

(2015) Edwin Wang et al.   SEMINARS IN CANCER BIOLOGY

Predicting lncRNA-disease associations and constructing lncRNA functional similarity network based on the information of miRNA

(2015) Xing Chen   Scientific Reports

KATZLDA: KATZ measure for the lncRNA-disease association prediction

(2015) Xing Chen   Scientific Reports

RBMMMDA: predicting multiple types of disease-microRNA associations

(2015) Xing Chen et al.   Scientific Reports

Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity

(2015) Xing Chen et al.   Scientific Reports

Inferring novel lncRNA–disease associations based on a random walk model of a lncRNA functional similarity network

(2014) Jie Sun et al.   Molecular BioSystems

Semi-supervised learning for potential human microRNA-disease associations inference

(2014) Xing Chen et al.   Scientific Reports

Novel human lncRNA–disease association inference based on lncRNA expression profiles

(2013) Xing Chen et al.   BIOINFORMATICS

RWRMDA: predicting novel human microRNA–disease associations

(2012) Xing Chen et al.   Molecular BioSystems

Drug–target interaction prediction by random walk on the heterogeneous network

(2012) Xing Chen et al.   Molecular BioSystems

INDI: a computational framework for inferring drug interactions and their associated recommendations

(2012) Assaf Gottlieb et al.   Molecular Systems Biology

Flaws in evaluation schemes for pair-input computational predictions

(2012) Yungki Park et al.   NATURE METHODS

Trastuzumab Produces Therapeutic Actions by Upregulating miR-26a and miR-30b in Breast Cancer Cells

(2012) Takehiro Ichikawa et al.   PLoS One

Endocrine Disruptor Regulation of MicroRNA Expression in Breast Carcinoma Cells

(2012) Syreeta L. Tilghman et al.   PLoS One

Prediction of Disease-Related Interactions between MicroRNAs and Environmental Factors Based on a Semi-Supervised Classifier

(2012) Xing Chen et al.   PLoS One

Modulation of MicroRNA-194 and Cell Migration by HER2-Targeting Trastuzumab in Breast Cancer

(2012) Xiao-Feng Le et al.   PLoS One

Towards the understanding of microRNA and environmental factor interactions and their relationships to human diseases

(2012) Chengxiang Qiu et al.   Scientific Reports

miREnvironment Database: providing a bridge for microRNAs, environmental factors and phenotypes

(2011) Qingqing Yang et al.   BIOINFORMATICS

Gaussian interaction profile kernels for predicting drug–target interaction

(2011) Twan van Laarhoven et al.   BIOINFORMATICS

High miR-26a and low CDC2 levels associate with decreased EZH2 expression and with favorable outcome on tamoxifen in metastatic breast cancer

(2011) M. P. H. M. Jansen et al.   BREAST CANCER RESEARCH AND TREATMENT

Plasma microRNA 210 levels correlate with sensitivity to trastuzumab and tumor presence in breast cancer patients

(2011) Eun-Jung Jung et al.   CANCER

microRNAs: Implications for air pollution research

(2011) Melanie J. Jardim   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

MicroRNA expression profiles in human cancer cells after ionizing radiation

(2011) Olivier M Niemoeller et al.   Radiation Oncology

Alteration in miRNA gene expression pattern in acute promyelocytic leukemia cell induced by arsenic trioxide: a possible mechanism to explain arsenic multi-target action

(2011) Seyed H. Ghaffari et al.   TUMOR BIOLOGY

3,3′-Diindolylmethane negatively regulates Cdc25A and induces a G2/M arrest by modulation of microRNA 21 in human breast cancer cells

(2010) Yucui Jin et al.   ANTI-CANCER DRUGS

Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework

(2010) Y. Yamanishi et al.   BIOINFORMATICS

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases

(2010) Dong Wang et al.   BIOINFORMATICS

Prioritization of disease microRNAs through a human phenome-microRNAome network

(2010) Qinghua Jiang et al.   BMC Systems Biology

Semi-supervised drug-protein interaction prediction from heterogeneous biological spaces

(2010) Zheng Xia et al.   BMC Systems Biology

PML-RARα/RXR Alters the Epigenetic Landscape in Acute Promyelocytic Leukemia

(2010) Joost H.A. Martens et al.   CANCER CELL

miRNAs in the pathogenesis of oncogenic human viruses

(2010) Zhen Lin et al.   CANCER LETTERS

Modulation of microRNA expression by budesonide, phenethyl isothiocyanate and cigarette smoke in mouse liver and lung

(2010) A. Izzotti et al.   CARCINOGENESIS

Predicting drug-target interactions based on an improved semi-supervised learning approach

(2010) Weiming Yu et al.   DRUG DEVELOPMENT RESEARCH

MicroRNA regulation of core apoptosis pathways in cancer

(2010) Raquel T. Lima et al.   EUROPEAN JOURNAL OF CANCER

Mirnome analysis reveals novel molecular determinants in the pathogenesis of diet-induced nonalcoholic fatty liver disease

(2010) Anna Alisi et al.   LABORATORY INVESTIGATION

Computationally Probing Drug-Protein Interactions Via Support Vector Machine

(2010) Yong-Cui Wang et al.   Letters in Drug Design & Discovery

miRNA-21 regulates arsenic-induced anti-leukemia activity in myelogenous cell lines

(2010) Jingyi Gu et al.   MEDICAL ONCOLOGY

Influence of stress and health-behaviour on miRNA expression

(2010) Gidron   Molecular Medicine Reports

Environmental causes of cancer: endocrine disruptors as carcinogens

(2010) Ana M. Soto et al.   Nature Reviews Endocrinology

Network medicine: a network-based approach to human disease

(2010) Albert-László Barabási et al.   NATURE REVIEWS GENETICS

Epidemiology and risk factors for kidney cancer

(2010) Wong-Ho Chow et al.   Nature Reviews Urology

A Novel Candidate Disease Genes Prioritization Method Based on Module Partition and Rank Fusion

(2010) Xing Chen et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Cigarette Smoke Induces C/EBP-β-Mediated Activation of miR-31 in Normal Human Respiratory Epithelia and Lung Cancer Cells

(2010) Sichuan Xi et al.   PLoS One

Supervised prediction of drug–target interactions using bipartite local models

(2009) Kevin Bleakley et al.   BIOINFORMATICS

MicroRNAs and their target messenger RNAs associated with ovarian cancer response to chemotherapy

(2009) Todd Boren et al.   GYNECOLOGIC ONCOLOGY

Short non-coding RNA biology and neurodegenerative disorders: novel disease targets and therapeutics

(2009) M. S. Weinberg et al.   HUMAN MOLECULAR GENETICS

Obesity: Genes, brain, gut, and environment

(2009) Undurti N. Das   NUTRITION

Walking the Interactome for Prioritization of Candidate Disease Genes

(2008) Sebastian Köhler et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Computational analysis of microRNA profiles and their target genes suggests significant involvement in breast cancer antiestrogen resistance

(2008) Fuxiao Xin et al.   BIOINFORMATICS

Prediction of drug-target interaction networks from the integration of chemical and genomic spaces

(2008) Y. Yamanishi et al.   BIOINFORMATICS

miR-133 and miR-30 Regulate Connective Tissue Growth Factor

(2008) Rudy F. Duisters et al.   CIRCULATION RESEARCH

Prognostic Value of Mature MicroRNA-21 and MicroRNA-205 Overexpression in Non-Small Cell Lung Cancer by Quantitative Real-Time RT-PCR

(2008) A. Markou et al.   CLINICAL CHEMISTRY

MicroRNA profiling in hepatocellular tumors is associated with clinical features and oncogene/tumor suppressor gene mutations

(2008) Yannick Ladeiro et al.   HEPATOLOGY

MicroRNA-221/222 Confers Tamoxifen Resistance in Breast Cancer by Targeting p27Kip1

(2008) Tyler E. Miller et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The microRNAs miR-373 and miR-520c promote tumour invasion and metastasis

(2008) Qihong Huang et al.   NATURE CELL BIOLOGY

MicroRNA in Cancer Prognosis

(2008) Frank J. Slack et al.   NEW ENGLAND JOURNAL OF MEDICINE

Evidence for dietary regulation of microRNA expression in cancer cells

(2008) Cindy D Davis et al.   NUTRITION REVIEWS

An Analysis of Human MicroRNA and Disease Associations

(2008) Ming Lu et al.   PLoS One