Eukaryotic stand-alone pseudouridine synthases – RNA modifying enzymes and emerging regulators of gene expression?

The Mechanistic Target of Rapamycin: The Grand ConducTOR of Metabolism and Aging

(2016) Brian K. Kennedy et al.   Cell Metabolism

Pseudouridines in U2 snRNA stimulate the ATPase activity of Prp5 during spliceosome assembly

(2016) Guowei Wu et al.   EMBO JOURNAL

Pseudouridylation of 7SK snRNA promotes 7SK snRNP formation to suppress HIV‐1 transcription and escape from latency

(2016) Yang Zhao et al.   EMBO REPORTS

A homozygous truncating mutation in PUS3 expands the role of tRNA modification in normal cognition

(2016) Ranad Shaheen et al.   HUMAN GENETICS

The Pseudouridine Synthases Proceed through a Glycal Intermediate

(2016) Govardhan Reddy Veerareddygari et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Pseudouridylation meets next-generation sequencing

(2016) Maryam Zaringhalam et al.   METHODS

The dynamic N1-methyladenosine methylome in eukaryotic messenger RNA

(2016) Dan Dominissini et al.   NATURE

RNA modification enzyme TruB is a tRNA chaperone

(2016) Laura Carole Keffer-Wilkes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TheTORsignaling pathway regulates starvation-induced pseudouridylation of yeast U2 snRNA

(2016) Guowei Wu et al.   RNA

Transcriptome-wide distribution and function of RNA hydroxymethylcytosine

(2016) B. Delatte et al.   SCIENCE

Messenger RNA modifications: Form, distribution, and function

(2016) W. V. Gilbert et al.   SCIENCE

Novel insight into MALAT-1 in cancer: Therapeutic targets and clinical applications

(2016) DANYANG REN et al.   Oncology Letters

Pseudouridine synthase 1 deficient mice, a model for Mitochondrial Myopathy with Sideroblastic Anemia, exhibit muscle morphology and physiology alterations

(2016) Joshua E. Mangum et al.   Scientific Reports

N 6-methyladenosine modification in mRNA: machinery, function and implications for health and diseases

(2015) Arpita Maity et al.   FEBS Journal

RNAN6-methyladenosine methylation in post-transcriptional gene expression regulation

(2015) Yanan Yue et al.   GENES & DEVELOPMENT

Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome

(2015) Xiaoyu Li et al.   Nature Chemical Biology

A-to-I editing of coding and non-coding RNAs by ADARs

(2015) Kazuko Nishikura   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Clinical and molecular study in a long-surviving patient with MLASA syndrome due to novel PUS1 mutations

(2015) Michelangelo Cao et al.   NEUROGENETICS

Pseudouridine: Still mysterious, but never a fake (uridine)!

(2015) Felix Spenkuch et al.   RNA Biology

RNA-guided isomerization of uridine to pseudouridine—pseudouridylation

(2015) Yi-Tao Yu et al.   RNA Biology

Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA

(2014) Schraga Schwartz et al.   CELL

Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells

(2014) Thomas M. Carlile et al.   NATURE

Transcriptome-Wide Mapping of Pseudouridines: Pseudouridine Synthases Modify Specific mRNAs in S. cerevisiae

(2014) Alexander F. Lovejoy et al.   PLoS One

yStreX: yeast stress expression database

(2014) Kwanjeera Wanichthanarak et al.   Database-The Journal of Biological Databases and Curation

A Pseudouridine Residue in the Spliceosome Core Is Part of the Filamentous Growth Program in Yeast

(2014) Anindita Basak et al.   Cell Reports

Genome-wide bimolecular fluorescence complementation analysis of SUMO interactome in yeast

(2013) M.-K. Sung et al.   GENOME RESEARCH

In Human Pseudouridine Synthase 1 (hPus1), a C-Terminal Helical Insert Blocks tRNA from Binding in the Same Orientation as in the Pus1 Bacterial Homologue TruA, Consistent with Their Different Target Selectivities

(2013) Nadine Czudnochowski et al.   JOURNAL OF MOLECULAR BIOLOGY

Principles of Cotranslational Ubiquitination and Quality Control at the Ribosome

(2013) Stefanie Duttler et al.   MOLECULAR CELL

Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation

(2013) Danielle L Swaney et al.   NATURE METHODS

Lysine Succinylation Is a Frequently Occurring Modification in Prokaryotes and Eukaryotes and Extensively Overlaps with Acetylation

(2013) Brian T. Weinert et al.   Cell Reports

Ribonucleases P/MRP and the Expanding Ribonucleoprotein World

(2012) Aaron Hernandez-Cid et al.   IUBMB LIFE

MODOMICS: a database of RNA modification pathways—2013 update

(2012) Magdalena A. Machnicka et al.   NUCLEIC ACIDS RESEARCH

Rationalization and prediction of selective decoding of pseudouridine-modified nonsense and sense codons

(2012) M. Parisien et al.   RNA

Converting nonsense codons into sense codons by targeted pseudouridylation

(2011) John Karijolich et al.   NATURE

Saccharomyces Genome Database: the genomics resource of budding yeast

(2011) J. M. Cherry et al.   NUCLEIC ACIDS RESEARCH

U2 snRNA is inducibly pseudouridylated at novel sites by Pus7p and snR81 RNP

(2010) Guowei Wu et al.   EMBO JOURNAL

Box H/ACA Small Ribonucleoproteins

(2010) Tamás Kiss et al.   MOLECULAR CELL

A Pseudouridine Synthase Homologue Is Critical to Cellular Differentiation inToxoplasma gondii

(2009) Matthew Z. Anderson et al.   EUKARYOTIC CELL

The Box H/ACA Ribonucleoprotein Complex: Interplay of RNA and Protein Structures in Post-transcriptional RNA Modification

(2009) Tomoko Hamma et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Loss of rRNA modifications in the decoding center of the ribosome impairs translation and strongly delays pre-rRNA processing

(2009) X.-h. Liang et al.   RNA

RNA Sequence and Two-dimensional Structure Features Required for Efficient Substrate Modification by theSaccharomyces cerevisiaeRNA:Ψ-Synthase Pus7p

(2008) Alan Urban et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A Multidimensional Chromatography Technology for In-depth Phosphoproteome Analysis

(2008) Claudio P. Albuquerque et al.   MOLECULAR & CELLULAR PROTEOMICS

Archaeal Pus10 proteins can produce both pseudouridine 54 and 55 in tRNA

(2008) P. Gurha et al.   RNA