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Title
Pseudouridine: Still mysterious, but never a fake (uridine)!
Authors
Keywords
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Journal
RNA Biology
Volume 11, Issue 12, Pages 1540-1554
Publisher
Informa UK Limited
Online
2015-01-24
DOI
10.4161/15476286.2014.992278
References
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- (2014) Schraga Schwartz et al. CELL
- Profiling of RNA modifications by multiplexed stable isotope labelling
- (2014) Stefanie Kellner et al. CHEMICAL COMMUNICATIONS
- 28S rRNA is inducibly pseudouridylated by the mTOR pathway translational control in CHO cell cultures
- (2014) Franck C. Courtes et al. JOURNAL OF BIOTECHNOLOGY
- Quantitative Analysis of rRNA Modifications Using Stable Isotope Labeling and Mass Spectrometry
- (2014) Anna M. Popova et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells
- (2014) Thomas M. Carlile et al. NATURE
- Crystal structure of a 4-thiouridine synthetase–RNA complex reveals specificity of tRNA U8 modification
- (2014) Piotr Neumann et al. NUCLEIC ACIDS RESEARCH
- Partial Methylation at Am100 in 18S rRNA of Baker's Yeast Reveals Ribosome Heterogeneity on the Level of Eukaryotic rRNA Modification
- (2014) Markus Buchhaupt et al. PLoS One
- Steroid Receptor RNA Activator (SRA) Modification by the Human Pseudouridine Synthase 1 (hPus1p): RNA Binding, Activity, and Atomic Model
- (2014) Tiphaine Huet et al. PLoS One
- A Pseudouridine Residue in the Spliceosome Core Is Part of the Filamentous Growth Program in Yeast
- (2014) Anindita Basak et al. Cell Reports
- Posttranscriptional RNA Modifications: Playing Metabolic Games in a Cell’s Chemical Legoland
- (2013) Mark Helm et al. CHEMISTRY & BIOLOGY
- Severity of X-linked Dyskeratosis Congenita (DKCX) Cellular Defects Is not Directly Related to Dyskerin (DKC1) Activity in Ribosomal RNA Biogenesis or mRNA Translation
- (2013) Naresh R. Thumati et al. HUMAN MUTATION
- In Human Pseudouridine Synthase 1 (hPus1), a C-Terminal Helical Insert Blocks tRNA from Binding in the Same Orientation as in the Pus1 Bacterial Homologue TruA, Consistent with Their Different Target Selectivities
- (2013) Nadine Czudnochowski et al. JOURNAL OF MOLECULAR BIOLOGY
- tRNA Binding, Positioning, and Modification by the Pseudouridine Synthase Pus10
- (2013) Rajashekhar Kamalampeta et al. JOURNAL OF MOLECULAR BIOLOGY
- Transfection of pseudouridine-modified mRNA encoding CPD-photolyase leads to repair of DNA damage in human keratinocytes: A new approach with future therapeutic potential
- (2013) Gábor Boros et al. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY
- Unusual base pairing during the decoding of a stop codon by the ribosome
- (2013) Israel S. Fernández et al. NATURE
- An arginine-aspartate network in the active site of bacterial TruB is critical for catalyzing pseudouridine formation
- (2013) J. Friedt et al. NUCLEIC ACIDS RESEARCH
- The mechanism of pseudouridine synthases from a covalent complex with RNA, and alternate specificity for U2605 versus U2604 between close homologs
- (2013) Nadine Czudnochowski et al. NUCLEIC ACIDS RESEARCH
- Structure modulation of helix 69 from Escherichia coli 23S ribosomal RNA by pseudouridylations
- (2013) Jun Jiang et al. NUCLEIC ACIDS RESEARCH
- The contribution of pseudouridine to stabilities and structure of RNAs
- (2013) Elzbieta Kierzek et al. NUCLEIC ACIDS RESEARCH
- Comparative Study of Two Box H/ACA Ribonucleoprotein Pseudouridine-Synthases: Relation between Conformational Dynamics of the Guide RNA, Enzyme Assembly and Activity
- (2013) Jean-Baptiste Fourmann et al. PLoS One
- Structural basis for C-ribosylation in the alnumycin A biosynthetic pathway
- (2013) Terhi Oja et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Thermodynamic contribution and nearest-neighbor parameters of pseudouridine-adenosine base pairs in oligoribonucleotides
- (2013) G. A. Hudson et al. RNA
- Role of forefinger and thumb loops in production of 54 and 55 in tRNAs by archaeal Pus10
- (2013) A. Joardar et al. RNA
- RNA pseudouridylation: new insights into an old modification
- (2013) Junhui Ge et al. TRENDS IN BIOCHEMICAL SCIENCES
- Role of Pseudouridine in Structural Rearrangements of Helix 69 During Bacterial Ribosome Assembly
- (2012) Yogo Sakakibara et al. ACS Chemical Biology
- Isotope-Based Analysis of Modified tRNA Nucleosides Correlates Modification Density with Translational Efficiency
- (2012) Caterina Brandmayr et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Ligand- and pH-Induced Conformational Changes of RNA Domain Helix 69 Revealed by 2-Aminopurine Fluorescence
- (2012) Yogo Sakakibara et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Pseudouridine Monophosphate Glycosidase: A New Glycosidase Mechanism
- (2012) Siyu Huang et al. BIOCHEMISTRY
- Different sensitivity of H69 modification enzymes RluD and RlmH to mutations in Escherichia coli 23S rRNA
- (2012) Margus Leppik et al. BIOCHIMIE
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- Increased Erythropoiesis in Mice Injected With Submicrogram Quantities of Pseudouridine-containing mRNA Encoding Erythropoietin
- (2012) Katalin Karikó et al. MOLECULAR THERAPY
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- MODOMICS: a database of RNA modification pathways—2013 update
- (2012) Magdalena A. Machnicka et al. NUCLEIC ACIDS RESEARCH
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- Human Mitochondrial tRNAs: Biogenesis, Function, Structural Aspects, and Diseases
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- Pseudouridine formation in archaeal RNAs: The case of Haloferax volcanii
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- (2011) Yuri Motorin et al. Wiley Interdisciplinary Reviews-RNA
- Functions and mechanisms of spliceosomal small nuclear RNA pseudouridylation
- (2011) Guowei Wu et al. Wiley Interdisciplinary Reviews-RNA
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- (2010) Luigi Warren et al. Cell Stem Cell
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- (2010) Monika Taucher et al. INTERNATIONAL JOURNAL OF MASS SPECTROMETRY
- A Flexible RNA Backbone within the Polypyrimidine Tract Is Required for U2AF65 Binding and Pre-mRNA Splicing In Vivo
- (2010) C. Chen et al. MOLECULAR AND CELLULAR BIOLOGY
- Effect of pseudouridylation on the structure and activity of the catalytically essential P6.1 hairpin in human telomerase RNA
- (2010) Nak-Kyoon Kim et al. NUCLEIC ACIDS RESEARCH
- Pseudouridine at position 55 in tRNA controls the contents of other modified nucleotides for low-temperature adaptation in the extreme-thermophilic eubacterium Thermus thermophilus
- (2010) Kazuo Ishida et al. NUCLEIC ACIDS RESEARCH
- Structural insight into the functional mechanism of Nep1/Emg1 N1-specific pseudouridine methyltransferase in ribosome biogenesis
- (2010) Seth R. Thomas et al. NUCLEIC ACIDS RESEARCH
- The ribosome assembly factor Nep1 responsible for Bowen–Conradi syndrome is a pseudouridine-N1-specific methyltransferase
- (2010) Jan Philip Wurm et al. NUCLEIC ACIDS RESEARCH
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- (2010) Britta Meyer et al. NUCLEIC ACIDS RESEARCH
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- (2010) Bart R. Anderson et al. NUCLEIC ACIDS RESEARCH
- Spliceosomal snRNA modifications and their function
- (2010) John Karijolich et al. RNA Biology
- Differential effects of nucleotide analogs on scanning-dependent initiation and elongation of mammalian mRNA translation in vitro
- (2010) J. L. Aspden et al. RNA
- Specificity and kinetics of 23S rRNA modification enzymes RlmH and RluD
- (2010) R. Ero et al. RNA
- Mutation of a Gene Essential for Ribosome Biogenesis, EMG1, Causes Bowen-Conradi Syndrome
- (2009) Joy Armistead et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Enzymatic characterization and mutational studies of TruD – the fifth family of pseudouridine synthases
- (2009) Chio Mui Chan et al. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS
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- (2009) Akram Alian et al. JOURNAL OF MOLECULAR BIOLOGY
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- (2009) Agnès Baudin-Baillieu et al. NUCLEIC ACIDS RESEARCH
- Deficiency of the tRNA Tyr :Ψ35-synthase aPus7 in Archaea of the Sulfolobales order might be rescued by the H/ACA sRNA-guided machinery
- (2009) Sébastien Muller et al. NUCLEIC ACIDS RESEARCH
- Loss of rRNA modifications in the decoding center of the ribosome impairs translation and strongly delays pre-rRNA processing
- (2009) X.-h. Liang et al. RNA
- Mass spectrometry of the fifth nucleoside: A review of the identification of pseudouridine in nucleic acids
- (2008) Anita Durairaj et al. ANALYTICA CHIMICA ACTA
- X-ray Structures of U2 snRNA−Branchpoint Duplexes Containing Conserved Pseudouridines†‡
- (2008) Yuan Lin et al. BIOCHEMISTRY
- RNomics and Modomics in the halophilic archaea Haloferax volcanii: identification of RNA modification genes
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- RNA Sequence and Two-dimensional Structure Features Required for Efficient Substrate Modification by theSaccharomyces cerevisiaeRNA:Ψ-Synthase Pus7p
- (2008) Alan Urban et al. JOURNAL OF BIOLOGICAL CHEMISTRY
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- (2008) W. A. Decatur et al. MOLECULAR AND CELLULAR BIOLOGY
- Incorporation of Pseudouridine Into mRNA Yields Superior Nonimmunogenic Vector With Increased Translational Capacity and Biological Stability
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- (2008) Jean-Paul Desaulniers et al. ORGANIC & BIOMOLECULAR CHEMISTRY
- pH-dependent structural changes of helix 69 from Escherichia coli 23S ribosomal RNA
- (2008) S. C. Abeysirigunawardena et al. RNA
- Identification of pseudouridine methyltransferase in Escherichia coli
- (2008) R. Ero et al. RNA
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- (2008) B. S. Sibert et al. RNA
- Long-distance placement of substrate RNA by H/ACA proteins
- (2008) B. Liang et al. RNA
- YbeA is the m3 methyltransferase RlmH that targets nucleotide 1915 in 23S rRNA
- (2008) E. Purta et al. RNA
- Archaeal Pus10 proteins can produce both pseudouridine 54 and 55 in tRNA
- (2008) P. Gurha et al. RNA
- Functionality and substrate specificity of human box H/ACA guide RNAs
- (2008) M. Xiao et al. RNA
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