DDX5/p68 associated lncRNA LOC284454 is differentially expressed in human cancers and modulates gene expression

Mrhl Long Noncoding RNA Mediates Meiotic Commitment of Mouse Spermatogonial Cells by Regulating Sox8 Expression

(2017) Shubhangini Kataruka et al.   MOLECULAR AND CELLULAR BIOLOGY

Integrated expression profiles analysis reveals novel predictive biomarker in pancreatic ductal adenocarcinoma

(2017) Hongzhe Li et al.   Oncotarget

Evolinc: A Tool for the Identification and Evolutionary Comparison of Long Intergenic Non-coding RNAs

(2017) Andrew D. L. Nelson et al.   Frontiers in Genetics

Long noncoding RNAs: Lessons from genomic imprinting

(2016) Chandrasekhar Kanduri   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

TP53-inducible Glycolysis and Apoptosis Regulator (TIGAR) Metabolically Reprograms Carcinoma and Stromal Cells in Breast Cancer

(2016) Ying-Hui Ko et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Coordinated Upregulation of Mitochondrial Biogenesis and Autophagy in Breast Cancer Cells: The Role of Dynamin Related Protein-1 and Implication for Breast Cancer Treatment

(2016) Peng Zou et al.   Oxidative Medicine and Cellular Longevity

EGFR expression is associated with cytoplasmic staining of CXCR4 and predicts poor prognosis in triple-negative breast carcinomas

(2016) Rong-Hui Li et al.   Oncology Letters

Transcriptome and long noncoding RNA sequencing of three extracellular vesicle subtypes released from the human colon cancer LIM1863 cell line

(2016) Maoshan Chen et al.   Scientific Reports

Tumor suppressor functions of BNIP3 and mitophagy

(2015) Aparajita H Chourasia et al.   Autophagy

Transposon mutagenesis identifies genetic drivers of BrafV600E melanoma

(2015) Michael B Mann et al.   NATURE GENETICS

Mechanism of Wnt signaling induced down regulation ofmrhllong non-coding RNA in mouse spermatogonial cells

(2015) Vijay Suresh Akhade et al.   NUCLEIC ACIDS RESEARCH

Genome wide chromatin occupancy ofmrhlRNA and its role in gene regulation in mouse spermatogonial cells

(2015) Vijay Suresh Akhade et al.   RNA Biology

Inhibition of long non-coding RNA NEAT1 impairs myeloid differentiation in acute promyelocytic leukemia cells

(2014) Chengwu Zeng et al.   BMC CANCER

P68 RNA helicase as a molecular target for cancer therapy

(2014) Ting-Yu Dai et al.   JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH

The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs

(2014) R. Johnson et al.   RNA

The DEAD box proteins DDX5 (p68) and DDX17 (p72): Multi-tasking transcriptional regulators

(2013) Frances V. Fuller-Pace   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

RNA helicase Ddx5 and the noncoding RNA SRA act as coactivators in the Notch signaling pathway

(2013) Claudia Jung et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Lipid Metabolism Genes in Contralateral Unaffected Breast and Estrogen Receptor Status of Breast Cancer

(2013) J. Wang et al.   Cancer Prevention Research

Long Noncoding RNAs: Cellular Address Codes in Development and Disease

(2013) Pedro J. Batista et al.   CELL

Hypoxia-inducible Factor 1 (HIF-1) Promotes Extracellular Matrix Remodeling under Hypoxic Conditions by InducingP4HA1, P4HA2,andPLOD2Expression in Fibroblasts

(2013) Daniele M. Gilkes et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

MALAT1 — a paradigm for long noncoding RNA function in cancer

(2013) Tony Gutschner et al.   JOURNAL OF MOLECULAR MEDICINE-JMM

Structure and function of long noncoding RNAs in epigenetic regulation

(2013) Tim R Mercer et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

(2013) Liguo Wang et al.   NUCLEIC ACIDS RESEARCH

Alu Elements in ANRIL Non-Coding RNA at Chromosome 9p21 Modulate Atherogenic Cell Functions through Trans-Regulation of Gene Networks

(2013) Lesca M. Holdt et al.   PLoS Genetics

Genome Regulation by Long Noncoding RNAs

(2012) John L. Rinn et al.   Annual Review of Biochemistry

Site identification in high-throughput RNA–protein interaction data

(2012) Philip J. Uren et al.   BIOINFORMATICS

Focal adhesion size uniquely predicts cell migration

(2012) Dong-Hwee Kim et al.   FASEB JOURNAL

Genome-wide analysis of long noncoding RNA stability

(2012) M. B. Clark et al.   GENOME RESEARCH

The long non-coding RNAs, a new cancer diagnostic and therapeutic gold mine

(2012) Peng Qi et al.   MODERN PATHOLOGY

mrhl RNA, a Long Noncoding RNA, Negatively Regulates Wnt Signaling through Its Protein Partner Ddx5/p68 in Mouse Spermatogonial Cells

(2012) G. Arun et al.   MOLECULAR AND CELLULAR BIOLOGY

Landscape of transcription in human cells

(2012) Sarah Djebali et al.   NATURE

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Expression of GLUT1 and GLUT3 Glucose Transporters in Endometrial and Breast Cancers

(2012) Anna Krzeslak et al.   PATHOLOGY & ONCOLOGY RESEARCH

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions

(2011) M. F. Lin et al.   BIOINFORMATICS

Conserved Function of lincRNAs in Vertebrate Embryonic Development despite Rapid Sequence Evolution

(2011) Igor Ulitsky et al.   CELL

ISG15 disrupts cytoskeletal architecture and promotes motility in human breast cancer cells

(2011) Shyamal D Desai et al.   EXPERIMENTAL BIOLOGY AND MEDICINE

Long non-coding RNA MALAT-1 overexpression predicts tumor recurrence of hepatocellular carcinoma after liver transplantation

(2011) Ming-chun Lai et al.   MEDICAL ONCOLOGY

Molecular Mechanisms of Long Noncoding RNAs

(2011) Kevin C. Wang et al.   MOLECULAR CELL

From unwinding to clamping — the DEAD box RNA helicase family

(2011) Patrick Linder et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

G1P3, an interferon- and estrogen-induced survival protein contributes to hyperplasia, tamoxifen resistance and poor outcomes in breast cancer

(2011) V Cheriyath et al.   ONCOGENE

Alu elements: know the SINEs

(2011) Prescott Deininger   GENOME BIOLOGY

X-Linked Ectodermal Dysplasia Receptor Is Downregulated in Breast Cancer via Promoter Methylation

(2010) V. Punj et al.   CLINICAL CANCER RESEARCH

Mediation of CTCF transcriptional insulation by DEAD-box RNA-binding protein p68 and steroid receptor RNA activator SRA

(2010) H. Yao et al.   GENES & DEVELOPMENT

Molecular Dissection of Telomeric Repeat-Containing RNA Biogenesis Unveils the Presence of Distinct and Multiple Regulatory Pathways

(2010) A. Porro et al.   MOLECULAR AND CELLULAR BIOLOGY

Cooperative and individualistic functions of the microRNAs in the miR-23a~27a~24-2 cluster and its implication in human diseases

(2010) Ravindresh Chhabra et al.   Molecular Cancer

Genome-wide Identification of Polycomb-Associated RNAs by RIP-seq

(2010) Jing Zhao et al.   MOLECULAR CELL

The RNA helicase p68 modulates expression and function of the Δ133 isoform(s) of p53 and is inversely associated with Δ133p53 expression in breast cancer

(2010) H C Moore et al.   ONCOGENE

Screening non-coding RNAs in transcriptomes from neglected species using PORTRAIT: case study of the pathogenic fungus Paracoccidioides brasiliensis

(2009) Roberto T Arrial et al.   BMC BIOINFORMATICS

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Gene expression profile of residual breast cancer after doxorubicin and cyclophosphamide neoadjuvant chemotherapy

(2009) Koike Folgueira   ONCOLOGY REPORTS

Mitogenomic relationships of placental mammals and molecular estimates of their divergences

(2008) Ulfur Arnason et al.   GENE

Noncoding RNA in development

(2008) Paulo P. Amaral et al.   MAMMALIAN GENOME

A novel noncoding RNA processed by Drosha is restricted to nucleus in mouse

(2008) G. Ganesan et al.   RNA

Polycomb Proteins Targeted by a Short Repeat RNA to the Mouse X Chromosome

(2008) J. Zhao et al.   SCIENCE