Tropical ancient DNA reveals relationships of the extinct Bahamian giant tortoiseChelonoidis alburyorum

Combined hybridization capture and shotgun sequencing for ancient DNA analysis of extinct wild and domestic dromedary camel

(2016) Elmira Mohandesan et al.   Molecular Ecology Resources

Insights into the Neotropics prior to the Great American Biotic Interchange: new evidence of mammalian predators from the Miocene of Northern Colombia

(2015) Catalina Suarez et al.   JOURNAL OF VERTEBRATE PALEONTOLOGY

Eocene primates of South America and the African origins of New World monkeys

(2015) Mariano Bond et al.   NATURE

Unexpected evolutionary diversity in a recently extinct Caribbean mammal radiation

(2015) S. Brace et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Comment on "Late Pleistocene human skeleton and mtDNA link Paleoamericans and modern Native Americans"

(2015) K. Prufer et al.   SCIENCE

Ancient Ethiopian genome reveals extensive Eurasian admixture in Eastern Africa

(2015) M. Gallego Llorente et al.   SCIENCE

The future of ancient DNA: Technical advances and conceptual shifts

(2014) Michael Hofreiter et al.   BIOESSAYS

Ancient DNA and the tropics: a rodent's tale

(2014) T. A. Gutierrez-Garcia et al.   Biology Letters

Late-Holocene faunal and landscape change in the Bahamas

(2014) David W Steadman et al.   HOLOCENE

Domination by Reptiles in a Terrestrial Food Web of the Bahamas Prior to Human Occupation

(2014) Alexander K. Hastings et al.   JOURNAL OF HERPETOLOGY

Late Pleistocene Human Skeleton and mtDNA Link Paleoamericans and Modern Native Americans

(2014) J. C. Chatters et al.   SCIENCE

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

(2013) Hákon Jónsson et al.   BIOINFORMATICS

A divergence dating analysis of turtles using fossil calibrations: an example of best practices

(2013) Walter G. Joyce et al.   JOURNAL OF PALEONTOLOGY

Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA

(2013) Marie-Theres Gansauge et al.   Nature Protocols

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

(2013) J. Dabney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancient DNA reveals that bowhead whale lineages survived Late Pleistocene climate change and habitat shifts

(2013) Andrew D. Foote et al.   Nature Communications

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage

(2013) H Bradley Shaffer et al.   GENOME BIOLOGY

Using Tablet for visual exploration of second-generation sequencing data

(2012) I. Milne et al.   BRIEFINGS IN BIOINFORMATICS

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

MITOS: Improved de novo metazoan mitochondrial genome annotation

(2012) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A dynamic and intricate regulatory network determines Pseudomonas aeruginosa virulence

(2012) Deepak Balasubramanian et al.   NUCLEIC ACIDS RESEARCH

FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads

(2012) Haibin Xu et al.   PLoS One

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Species-specific responses of Late Quaternary megafauna to climate and humans

(2011) Eline D. Lorenzen et al.   NATURE

Middle Eocene rodents from Peruvian Amazonia reveal the pattern and timing of caviomorph origins and biogeography

(2011) P.-O. Antoine et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Ecological history and latent conservation potential: large and giant tortoises as a model for taxon substitutions

(2010) Dennis M. Hansen et al.   ECOGRAPHY

Multiplexed DNA Sequence Capture of Mitochondrial Genomes Using PCR Products

(2010) Tomislav Maricic et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Unexpected early extinction of the European pond turtle (Emys orbicularis) in Sweden and climatic impact on its Holocene range

(2009) ROBERT S. SOMMER et al.   MOLECULAR ECOLOGY

The Use of Extant Non-Indigenous Tortoises as a Restoration Tool to Replace Extinct Ecosystem Engineers

(2009) Christine J. Griffiths et al.   RESTORATION ECOLOGY