Phosphoproteins in extracellular vesicles as candidate markers for breast cancer

Proteogenomics connects somatic mutations to signalling in breast cancer

(2016) Philipp Mertins et al.   NATURE

The Perseus computational platform for comprehensive analysis of (prote)omics data

(2016) Stefka Tyanova et al.   NATURE METHODS

Proteomic comparison defines novel markers to characterize heterogeneous populations of extracellular vesicle subtypes

(2016) Joanna Kowal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Parallel reaction monitoring using quadrupole-Orbitrap mass spectrometer: Principle and applications

(2016) Adele Bourmaud et al.   PROTEOMICS

A pathway-based approach for identifying biomarkers of tumor progression to trastuzumab-resistant breast cancer

(2015) Seungyoon Nam et al.   CANCER LETTERS

Glypican-1 identifies cancer exosomes and detects early pancreatic cancer

(2015) Sonia A. Melo et al.   NATURE

A niche role for cancer exosomes in metastasis

(2015) Yun Zhang et al.   NATURE CELL BIOLOGY

Pancreatic cancer exosomes initiate pre-metastatic niche formation in the liver

(2015) Bruno Costa-Silva et al.   NATURE CELL BIOLOGY

PANTHER version 10: expanded protein families and functions, and analysis tools

(2015) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Exosomes in bodily fluids are a highly stable resource of disease biomarkers

(2015) Stephanie Boukouris et al.   Proteomics Clinical Applications

Ectosomes and exosomes: shedding the confusion between extracellular vesicles

(2015) Emanuele Cocucci et al.   TRENDS IN CELL BIOLOGY

Analytical challenges translating mass spectrometry-based phosphoproteomics from discovery to clinical applications

(2014) Anton B. Iliuk et al.   ELECTROPHORESIS

N-linked (N-) Glycoproteomics of Urimary Exosomes*

(2014) Mayank Saraswat et al.   MOLECULAR & CELLULAR PROTEOMICS

Quantitative phosphoproteomic analysis reveals system-wide signaling pathways downstream of SDF-1/CXCR4 in breast cancer stem cells

(2014) T. Yi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inhibition of phosphodiesterase 5 reduces bone mass by suppression of canonical Wnt signaling

(2014) Y Gong et al.   Cell Death & Disease

Ultradeep Human Phosphoproteome Reveals a Distinct Regulatory Nature of Tyr and Ser/Thr-Based Signaling

(2014) Kirti Sharma et al.   Cell Reports

Sequential Phosphoproteomic Enrichment through Complementary Metal-Directed Immobilized Metal Ion Affinity Chromatography

(2013) Chia-Feng Tsai et al.   ANALYTICAL CHEMISTRY

pLogo: a probabilistic approach to visualizing sequence motifs

(2013) Joseph P O'Shea et al.   NATURE METHODS

Comparative proteomics evaluation of plasma exosome isolation techniques and assessment of the stability of exosomes in normal human blood plasma

(2013) Hina Kalra et al.   PROTEOMICS

Defining the genomic signature of the parous breast

(2012) Suraj Peri et al.   BMC Medical Genomics

Clinical use of phosphorylated proteins in blood serum analysed by immobilised metal ion affinity chromatography and mass spectrometry

(2012) Julian A.J. Jaros et al.   Journal of Proteomics

Multiplexed Quantitation of Protein Expression and Phosphorylation Based on Functionalized Soluble Nanopolymers

(2012) Li Pan et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Chemical Visualization of Phosphoproteomes on Membrane

(2012) Anton Iliuk et al.   MOLECULAR & CELLULAR PROTEOMICS

Characterization of Membrane-shed Microvesicles from Cytokine-stimulated β-Cells Using Proteomics Strategies

(2012) Giuseppe Palmisano et al.   MOLECULAR & CELLULAR PROTEOMICS

Microscale Phosphoproteome Analysis of 10 000 Cells from Human Cancer Cell Lines

(2011) Takeshi Masuda et al.   ANALYTICAL CHEMISTRY

Characterisation of exosomes derived from human cells by nanoparticle tracking analysis and scanning electron microscopy

(2011) Viktoriya Sokolova et al.   COLLOIDS AND SURFACES B-BIOINTERFACES

Methodology for isolation, identification and characterization of microvesicles in peripheral blood

(2011) Muthuvel Jayachandran et al.   JOURNAL OF IMMUNOLOGICAL METHODS

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

(2010) Brendan MacLean et al.   BIOINFORMATICS

Unbiased Quantitation of Escherichia coli Membrane Proteome Using Phase Transfer Surfactants

(2009) Takeshi Masuda et al.   MOLECULAR & CELLULAR PROTEOMICS

Profiling of Endogenous Serum Phosphorylated Peptides by Titanium (IV) Immobilized Mesoporous Silica Particles Enrichment and MALDI-TOFMS Detection

(2008) Lianghai Hu et al.   ANALYTICAL CHEMISTRY

Large-Scale Proteomics and Phosphoproteomics of Urinary Exosomes

(2008) P. A. Gonzales et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY