The 3D Organization of the Yeast Genome Correlates with Co-Expression and Reflects Functional Relations between Genes

Dynamical Modeling of Three-Dimensional Genome Organization in Interphase Budding Yeast

(2012) Naoko Tokuda et al.   BIOPHYSICAL JOURNAL

Normalization of a chromosomal contact map

(2012) Axel Cournac et al.   BMC GENOMICS

A Predictive Computational Model of the Dynamic 3D Interphase Yeast Nucleus

(2012) Hua Wong et al.   CURRENT BIOLOGY

Physical tethering and volume exclusion determine higher-order genome organization in budding yeast

(2012) H. Tjong et al.   GENOME RESEARCH

Iterative correction of Hi-C data reveals hallmarks of chromosome organization

(2012) Maxim Imakaev et al.   NATURE METHODS

Chromosome positioning and the clustering of functionally related loci in yeast is driven by chromosomal interactions

(2012) Lutz R. Gehlen et al.   Nucleus

Principles of chromosomal organization: lessons from yeast

(2011) Christophe Zimmer et al.   JOURNAL OF CELL BIOLOGY

Genome architectures revealed by tethered chromosome conformation capture and population-based modeling

(2011) Reza Kalhor et al.   NATURE BIOTECHNOLOGY

Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture

(2011) Eitan Yaffe et al.   NATURE GENETICS

Yeast chromosomal interactions and nuclear architecture

(2010) Justin M O'Sullivan   CURRENT OPINION IN CELL BIOLOGY

Genome Organization and Function: A View from Yeast and Arabidopsis

(2010) Julio Sáez-Vásquez et al.   Molecular Plant

A three-dimensional model of the yeast genome

(2010) Zhijun Duan et al.   NATURE

Mapping of long-range associations throughout the fission yeast genome reveals global genome organization linked to transcriptional regulation

(2010) Hideki Tanizawa et al.   NUCLEIC ACIDS RESEARCH

The Budding Yeast Nucleus

(2010) A. Taddei et al.   Cold Spring Harbor Perspectives in Biology

Global identification of yeast chromosome interactions using Genome conformation capture

(2009) C.D.M. Rodley et al.   FUNGAL GENETICS AND BIOLOGY

The functional importance of telomere clustering: Global changes in gene expression result from SIR factor dispersion

(2009) A. Taddei et al.   GENOME RESEARCH

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

The Meaning of Gene Positioning

(2008) Takumi Takizawa et al.   CELL

Eukaryotic gene regulation in three dimensions and its impact on genome evolution

(2008) M Madan Babu et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Allele-specific nuclear positioning of the monoallelically expressed astrocyte marker GFAP

(2008) T. Takizawa et al.   GENES & DEVELOPMENT

High-resolution statistical mapping reveals gene territories in live yeast

(2008) Axel B Berger et al.   NATURE METHODS

Transcriptional regulation constrains the organization of genes on eukaryotic chromosomes

(2008) S. C. Janga et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA