Assessing regulatory information in developmental gene regulatory networks

Making Sense of Transcription Networks

(2015) Trevor R. Sorrells et al.   CELL

Morphogen rules: design principles of gradient-mediated embryo patterning

(2015) J. Briscoe et al.   DEVELOPMENT

Sub-circuits of a gene regulatory network control a developmental epithelial-mesenchymal transition

(2014) L. R. Saunders et al.   DEVELOPMENT

Genome-wide analysis of the skeletogenic gene regulatory network of sea urchins

(2014) K. Rafiq et al.   DEVELOPMENT

Su(H)-Mediated Repression Positions Gene Boundaries along the Dorsal-Ventral Axis of Drosophila Embryos

(2014) Anil Ozdemir et al.   DEVELOPMENTAL CELL

Specific functions of the Wnt signaling system in gene regulatory networks throughout the early sea urchin embryo

(2014) Miao Cui et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene Regulatory Logic for Reading the Sonic Hedgehog Signaling Gradient in the Vertebrate Neural Tube

(2012) Nikolaos Balaskas et al.   CELL

Cis-regulatory logic driving glial cells missing: Self-sustaining circuitry in later embryogenesis

(2012) Andrew Ransick et al.   DEVELOPMENTAL BIOLOGY

Diversification of oral and aboral mesodermal regulatory states in pregastrular sea urchin embryos

(2012) Stefan C. Materna et al.   DEVELOPMENTAL BIOLOGY

Predictive computation of genomic logic processing functions in embryonic development

(2012) I. S. Peter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interlocked Feedforward Loops Control Cell-Type-Specific Rhodopsin Expression in the Drosophila Eye

(2011) Robert J. Johnston et al.   CELL

Evolution of Gene Regulatory Networks Controlling Body Plan Development

(2011) Isabelle S. Peter et al.   CELL

A gene regulatory network controlling the embryonic specification of endoderm

(2011) Isabelle S. Peter et al.   NATURE

The gap gene network

(2010) Johannes Jaeger   CELLULAR AND MOLECULAR LIFE SCIENCES

An atlas of gene regulatory networks reveals multiple three-gene mechanisms for interpreting morphogen gradients

(2010) James Cotterell et al.   Molecular Systems Biology

Information processing at the foxa node of the sea urchin endomesoderm specification network

(2010) S. B.-T. de-Leon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Modeling Reveals Bistability and Low-Pass Filtering in the Network Module Determining Blood Stem Cell Fate

(2010) Jatin Narula et al.   PLoS Computational Biology

Dynamics of Delta/Notch signaling on endomesoderm segregation in the sea urchin embryo

(2009) J. C. Croce et al.   DEVELOPMENT

The gene regulatory network basis of the “community effect,” and analysis of a sea urchin embryo example

(2009) Hamid Bolouri et al.   DEVELOPMENTAL BIOLOGY

The endoderm gene regulatory network in sea urchin embryos up to mid-blastula stage

(2009) Isabelle S. Peter et al.   DEVELOPMENTAL BIOLOGY

Modularity and design principles in the sea urchin embryo gene regulatory network

(2009) Isabelle S. Peter et al.   FEBS LETTERS

The evolution of hierarchical gene regulatory networks

(2009) Douglas H. Erwin et al.   NATURE REVIEWS GENETICS

Global regulatory logic for specification of an embryonic cell lineage

(2008) P. Oliveri et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Properties of developmental gene regulatory networks

(2008) E. H. Davidson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA