Natural and artificial feeding management before weaning promote different rumen microbial colonization but not differences in gene expression levels at the rumen epithelium of newborn goats

Development and physiology of the rumen and the lower gut: Targets for improving gut health 1

(2016) Michael A. Steele et al.   JOURNAL OF DAIRY SCIENCE

Development of Ruminal and Fecal Microbiomes Are Affected by Weaning But Not Weaning Strategy in Dairy Calves

(2016) Sarah J. Meale et al.   Frontiers in Microbiology

Effects of early feeding on the host rumen transcriptome and bacterial diversity in lambs

(2016) Weimin Wang et al.   Scientific Reports

Taxonomic Identification of Ruminal Epithelial Bacterial Diversity during Rumen Development in Goats

(2015) Jinzhen Jiao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effect of microencapsulated sodium butyrate in the close-up diet on performance of dairy cows in the early lactation period

(2015) Z.M. Kowalski et al.   JOURNAL OF DAIRY SCIENCE

Vaccination of cattle with a methanogen protein produces specific antibodies in the saliva which are stable in the rumen

(2015) Supatsak Subharat et al.   VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY

Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

(2015) Gemma Henderson et al.   Scientific Reports

Taxonomic Identification of Commensal Bacteria Associated with the Mucosa and Digesta throughout the Gastrointestinal Tracts of Preweaned Calves

(2014) Nilusha Malmuthuge et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Study of methanogen communities associated with different rumen protozoal populations

(2014) Alejandro Belanche et al.   FEMS MICROBIOLOGY ECOLOGY

Cooperativity among secretory IgA, the polymeric immunoglobulin receptor, and the gut microbiota promotes host–microbial mutualism

(2014) Charlotte S. Kaetzel   IMMUNOLOGY LETTERS

Exploring the bovine rumen bacterial community from birth to adulthood

(2013) Elie Jami et al.   ISME Journal

Nutritional intervention in early life to manipulate rumen microbial colonization and methane output by kid goats postweaning1

(2013) L. Abecia et al.   JOURNAL OF ANIMAL SCIENCE

Establishment of ruminal bacterial community in dairy calves from birth to weaning is sequential

(2013) M. Rey et al.   JOURNAL OF APPLIED MICROBIOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Effects of the early social environment on behavioral responses of dairy calves to novel events

(2012) A. De Paula Vieira et al.   JOURNAL OF DAIRY SCIENCE

Fast, accurate error-correction of amplicon pyrosequences using Acacia

(2012) Lauren Bragg et al.   NATURE METHODS

Composition and Similarity of Bovine Rumen Microbiota across Individual Animals

(2012) Elie Jami et al.   PLoS One

Regional and age dependent changes in gene expression of Toll-like receptors and key antimicrobial defence molecules throughout the gastrointestinal tract of dairy calves

(2012) Nilusha Malmuthuge et al.   VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY

Impact of Feed Efficiency and Diet on Adaptive Variations in the Bacterial Community in the Rumen Fluid of Cattle

(2011) Emma Hernandez-Sanabria et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Immune system development during early childhood in tropical Latin America: Evidence for the age-dependent down regulation of the innate immune response

(2011) Rommy Teran et al.   CLINICAL IMMUNOLOGY

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Effect of method of delivery of sodium butyrate on rumen development in newborn calves

(2011) P. Górka et al.   JOURNAL OF DAIRY SCIENCE

Effects of Na-butyrate supplementation in milk formula on plasma concentrations of GH and insulin, and on rumen papilla development in calves

(2011) Shin-Ichi Kato et al.   JOURNAL OF ENDOCRINOLOGY

The persistence of bacterial and methanogenic archaeal communities residing in the rumen of young lambs

(2010) David R. Yáñez-Ruiz et al.   FEMS MICROBIOLOGY ECOLOGY

Mouse Peptidoglycan Recognition Protein PGLYRP-1 Plays a Role in the Host Innate Immune Response againstListeria monocytogenesInfection

(2010) Arihiro Osanai et al.   INFECTION AND IMMUNITY

Human TLRs 10 and 1 Share Common Mechanisms of Innate Immune Sensing but Not Signaling

(2010) Y. Guan et al.   JOURNAL OF IMMUNOLOGY

Diet, gut microbiota and immune responses

(2010) Kendle M Maslowski et al.   NATURE IMMUNOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Pathogen Recognition and Inflammatory Signaling in Innate Immune Defenses

(2009) T. H. Mogensen   CLINICAL MICROBIOLOGY REVIEWS

The role of the intestinal microbiota in enteric infection

(2009) Inna Sekirov et al.   JOURNAL OF PHYSIOLOGY-LONDON

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE