Development of EST-SSR markers in flowering Chinese cabbage (Brassica campestris L. ssp. chinensis var. utilis Tsen et Lee) based on de novo transcriptomic assemblies

Development of Gene-Based SSR Markers in Rice Bean (Vigna umbellata L.) Based on Transcriptome Data

(2016) Honglin Chen et al.   PLoS One

De novo Transcriptome Analysis and Molecular Marker Development of Two Hemarthria Species

(2016) Xiu Huang et al.   Frontiers in Plant Science

Genome-wide identification of SSR and SNP markers from the non-heading Chinese cabbage for comparative genomic analyses

(2015) Xiaoming Song et al.   BMC GENOMICS

Functional molecular markers (EST-SSR) in the full-sib reciprocal recurrent selection program of maize (Zea mays L.)

(2015) K.S.C. Galvão et al.   GENETICS AND MOLECULAR RESEARCH

SSR markers: a tool for species identification in Psidium (Myrtaceae)

(2015) A. C. Tuler et al.   MOLECULAR BIOLOGY REPORTS

Characterization and Development of EST-SSRs by Deep Transcriptome Sequencing in Chinese Cabbage (Brassica rapaL. ssp.pekinensis)

(2015) Qian Ding et al.   International Journal of Genomics

De Novo Assembly and Discovery of Genes That Are Involved in Drought Tolerance in Tibetan Sophora moorcroftiana

(2015) Huie Li et al.   PLoS One

Transcriptome Sequencing of Mung Bean (Vigna radiate L.) Genes and the Identification of EST-SSR Markers

(2015) Honglin Chen et al.   PLoS One

RNA-Seq SSRs of Moth Orchid and Screening for Molecular Markers across Genus Phalaenopsis (Orchidaceae)

(2015) Chi-Chu Tsai et al.   PLoS One

De novo assembly of red clover transcriptome based on RNA-Seq data provides insight into drought response, gene discovery and marker identification

(2014) Steven A Yates et al.   BMC GENOMICS

Characterization of the global transcriptome for cotton (Gossypium hirsutum L.) anther and development of SSR marker

(2014) Xianwen Zhang et al.   GENE

De Novo Assembled Transcriptome Analysis and SSR Marker Development of a Mixture of Six Tissues from Lilium Oriental Hybrid ‘Sorbonne’

(2014) F. Du et al.   PLANT MOLECULAR BIOLOGY REPORTER

Transcriptome Analysis of Houttuynia cordata Thunb. by Illumina Paired-End RNA Sequencing and SSR Marker Discovery

(2014) Lin Wei et al.   PLoS One

De novo characterization of the Anthurium transcriptome and analysis of its digital gene expression under cold stress

(2013) Dan-Qing Tian et al.   BMC GENOMICS

Construction of a reference genetic linkage map for carnation (Dianthus caryophyllus L.)

(2013) Masafumi Yagi et al.   BMC GENOMICS

The use of genotyping by sequencing in blackcurrant (Ribes nigrum): developing high-resolution linkage maps in species without reference genome sequences

(2013) Joanne Russell et al.   MOLECULAR BREEDING

Novel and useful genic-SSR markers from de novo transcriptome sequencing of radish (Raphanus sativus L.)

(2013) Lulu Zhai et al.   MOLECULAR BREEDING

Global Transcriptome Sequencing Using the Illumina Platform and the Development of EST-SSR Markers in Autotetraploid Alfalfa

(2013) Zhipeng Liu et al.   PLoS One

PICcalc: An Online Program to Calculate Polymorphic Information Content for Molecular Genetic Studies

(2012) Sándor Nagy et al.   BIOCHEMICAL GENETICS

Development and validation of genic-SSR markers in sesame by RNA-seq

(2012) Haiyang Zhang et al.   BMC GENOMICS

De novo assembly and Characterisation of the Transcriptome during seed development, and generation of genic-SSR markers in Peanut (Arachis hypogaea L.)

(2012) Jianan Zhang et al.   BMC GENOMICS

Transcriptome analysis of the roots at early and late seedling stages using Illumina paired-end sequencing and development of EST-SSR markers in radish

(2012) Shufen Wang et al.   PLANT CELL REPORTS

Comparative high-throughput transcriptome sequencing and development of SiESTa, the Silene EST annotation database

(2011) Nicolas Blavet et al.   BMC GENOMICS

Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers

(2011) Wenliang Wei et al.   BMC GENOMICS

Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]

(2011) Sutapa Dutta et al.   BMC PLANT BIOLOGY

Exploiting BAC-end sequences for the mining, characterization and utility of new short sequences repeat (SSR) markers in Citrus

(2011) Manosh Kumar Biswas et al.   MOLECULAR BIOLOGY REPORTS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Assembly algorithms for next-generation sequencing data

(2010) Jason R. Miller et al.   GENOMICS

Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage

(2009) Peiguo Guo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Highly variable SSR markers suitable for rice genotyping using agarose gels

(2009) Harvinder Singh et al.   MOLECULAR BREEDING