Impact of environmental microbiota on human microbiota of workers in academic mouse research facilities: An observational study

Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans

(2016) Tommi Vatanen et al.   CELL

Indoor microbial communities: Influence on asthma severity in atopic and nonatopic children

(2016) Karen C. Dannemiller et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Innate Immunity and Asthma Risk in Amish and Hutterite Farm Children

(2016) Michelle M. Stein et al.   NEW ENGLAND JOURNAL OF MEDICINE

Analysis of the mouse gut microbiome using full-length 16S rRNA amplicon sequencing

(2016) Jongoh Shin et al.   Scientific Reports

Early infancy microbial and metabolic alterations affect risk of childhood asthma

(2015) Marie-Claire Arrieta et al.   Science Translational Medicine

structSSI: Simultaneous and Selective Inference for Grouped or Hierarchically Structured Data

(2015) Kris Sankaran et al.   Journal of Statistical Software

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

The Earth Microbiome project: successes and aspirations

(2014) Jack A Gilbert et al.   BMC BIOLOGY

A case control study of environmental and occupational exposures associated with methicillin resistant Staphylococcus aureus nasal carriage in patients admitted to a rural tertiary care hospital in a high density swine region

(2014) Leah Schinasi et al.   Environmental Health

Early exposure to bio-contaminants and asthma up to 10 years of age: results of the HITEA study

(2014) Christina Tischer et al.   EUROPEAN RESPIRATORY JOURNAL

Effects of early-life exposure to allergens and bacteria on recurrent wheeze and atopy in urban children

(2014) Susan V. Lynch et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Livestock-Associated Methicillin-Resistant Staphylococcus aureus ST9 in Pigs and Related Personnel in Taiwan

(2014) Hsin-Wei Fang et al.   PLoS One

Susceptibility to Campylobacter Infection Is Associated with the Species Composition of the Human Fecal Microbiota

(2014) J. Dicksved et al.   mBio

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

The Intestinal Microbiome in Early Life: Health and Disease

(2014) Marie-Claire Arrieta et al.   Frontiers in Immunology

The Effects of Airway Microbiome on Corticosteroid Responsiveness in Asthma

(2013) Elena Goleva et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Isolation and Characterization of Methicillin-Resistant Staphylococcus aureus from Pork Farms and Visiting Veterinary Students

(2013) Timothy S. Frana et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Asthma-associated differences in microbial composition of induced sputum

(2012) Pradeep Reddy Marri et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Bayesian community-wide culture-independent microbial source tracking

(2011) Dan Knights et al.   NATURE METHODS

Allergic rhinitis in laboratory animal workers and its risk factors

(2010) Jeong Hun Jang et al.   ANNALS OF ALLERGY ASTHMA & IMMUNOLOGY

Determination of bacterial load in house dust using qPCR, chemical markers and culture

(2010) Päivi M. Kärkkäinen et al.   JOURNAL OF ENVIRONMENTAL MONITORING

Bacterial Community Variation in Human Body Habitats Across Space and Time

(2009) E. K. Costello et al.   SCIENCE

Health effects due to endotoxin inhalation (review)

(2008) V. Liebers et al.   ARCHIVES OF TOXICOLOGY