Targeted proteome analysis of single-gene deletion strains of Saccharomyces cerevisiae lacking enzymes in the central carbon metabolism

Systems-level analysis of mechanisms regulating yeast metabolic flux

(2016) S. R. Hackett et al.   SCIENCE

Cellular growth defects triggered by an overload of protein localization processes

(2016) Reiko Kintaka et al.   Scientific Reports

Post-translational modifications on yeast carbon metabolism: Regulatory mechanisms beyond transcriptional control

(2015) Farida Tripodi et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Nano-scale liquid chromatography coupled to tandem mass spectrometry using the multiple reaction monitoring mode based quantitative platform for analyzing multiple enzymes associated with central metabolic pathways of Saccharomyces cerevisiae using ultra fast mass spectrometry

(2015) Fumio Matsuda et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Multi-tasking of biosynthetic and energetic functions of glycolysis explained by supply and demand logic

(2014) Johan H. van Heerden et al.   BIOESSAYS

Revisiting yeast trehalose metabolism

(2014) Elis Eleutherio et al.   CURRENT GENETICS

Allosteric regulation of phosphofructokinase controls the emergence of glycolytic oscillations in isolated yeast cells

(2014) Anna-Karin Gustavsson et al.   FEBS Journal

Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells

(2014) Nils A Kulak et al.   NATURE METHODS

Visual account of protein investment in cellular functions

(2014) W. Liebermeister et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lost in Transition: Start-Up of Glycolysis Yields Subpopulations of Nongrowing Cells

(2014) J. H. van Heerden et al.   SCIENCE

A glycolytic metabolon inSaccharomyces cerevisiaeis stabilized by F-actin

(2013) Daniela Araiza-Olivera et al.   FEBS Journal

Cloning and characterization of a panel of constitutive promoters for applications in pathway engineering in Saccharomyces cerevisiae

(2012) Jie Sun et al.   BIOTECHNOLOGY AND BIOENGINEERING

VANTED v2: a framework for systems biology applications

(2012) Hendrik Rohn et al.   BMC Systems Biology

Evaluation and Properties of the Budding Yeast Phosphoproteome

(2012) Grigoris D. Amoutzias et al.   MOLECULAR & CELLULAR PROTEOMICS

Robustness analysis of cellular systems using the genetic tug-of-war method

(2012) Hisao Moriya et al.   Molecular BioSystems

Regulation of yeast central metabolism by enzyme phosphorylation

(2012) Ana Paula Oliveira et al.   Molecular Systems Biology

Systematic identification of gene annotation errors in the widely used yeast mutation collections

(2012) Taly Ben-Shitrit et al.   NATURE METHODS

The development of selected reaction monitoring methods for targeted proteomics via empirical refinement

(2012) Michael S. Bereman et al.   PROTEOMICS

Gpd1 and Gpd2 Fine-Tuning for Sustainable Reduction of Glycerol Formation in Saccharomyces cerevisiae

(2011) Georg Hubmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Correlation of gene expression and protein production rate - a system wide study

(2011) Mikko Arvas et al.   BMC GENOMICS

Pyruvate Kinase Triggers a Metabolic Feedback Loop that Controls Redox Metabolism in Respiring Cells

(2011) Nana-Maria Grüning et al.   Cell Metabolism

Absolute Quantification of the Glycolytic Pathway in Yeast:

(2011) Kathleen M. Carroll et al.   MOLECULAR & CELLULAR PROTEOMICS

Comprehensive quantitative analysis of central carbon and amino-acid metabolism in Saccharomyces cerevisiae under multiple conditions by targeted proteomics

(2011) R. Costenoble et al.   Molecular Systems Biology

The Warburg and Crabtree effects: On the origin of cancer cell energy metabolism and of yeast glucose repression

(2010) Rodrigo Diaz-Ruiz et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

(2010) Brendan MacLean et al.   BIOINFORMATICS

Unraveling condition-dependent networks of transcription factors that control metabolic pathway activity in yeast

(2010) Sarah-Maria Fendt et al.   Molecular Systems Biology

Full Dynamic Range Proteome Analysis of S. cerevisiae by Targeted Proteomics

(2009) Paola Picotti et al.   CELL

Global analysis of the yeast osmotic stress response by quantitative proteomics

(2009) Boumediene Soufi et al.   Molecular BioSystems

High-throughput generation of selected reaction-monitoring assays for proteins and proteomes

(2009) Paola Picotti et al.   NATURE METHODS

Dynamics of Glycolytic Regulation during Adaptation of Saccharomyces cerevisiae to Fermentative Metabolism

(2008) J. van den Brink et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Proteome analysis of aerobically and anaerobically grown Saccharomyces cerevisiae cells

(2008) Astrid Bruckmann et al.   Journal of Proteomics

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

(2008) Lyris M. F. de Godoy et al.   NATURE

A database of mass spectrometric assays for the yeast proteome

(2008) Paola Picotti et al.   NATURE METHODS

Quantitative Atlas of Membrane Transporter Proteins: Development and Application of a Highly Sensitive Simultaneous LC/MS/MS Method Combined with Novel In-silico Peptide Selection Criteria

(2008) Junichi Kamiie et al.   PHARMACEUTICAL RESEARCH