SNP-Discovery by RAD-Sequencing in a Germplasm Collection of Wild and Cultivated Grapevines (V. vinifera L.)

Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies

(2016) Stéphane D. Nicolas et al.   BMC PLANT BIOLOGY

The limits and potential of paleogenomic techniques for reconstructing grapevine domestication

(2016) Nathan Wales et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Construction of a high-density genetic map and QTLs mapping for sugars and acids in grape berries

(2015) Jie Chen et al.   BMC PLANT BIOLOGY

Study of genetic variability in Vitis vinifera L. germplasm by high-throughput Vitis18kSNP array: the case of Georgian genetic resources

(2015) Gabriella De Lorenzis et al.   BMC PLANT BIOLOGY

Comprehensive transcript profiling of two grapevine rootstock genotypes contrasting in drought susceptibility links the phenylpropanoid pathway to enhanced tolerance

(2015) Massimiliano Corso et al.   JOURNAL OF EXPERIMENTAL BOTANY

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype

(2014) Nicola Vitulo et al.   BMC PLANT BIOLOGY

Whole genome comparison between table and wine grapes reveals a comprehensive catalog of structural variants

(2014) Alex Di Genova et al.   BMC PLANT BIOLOGY

Detecting Natural Selection in Genomic Data

(2013) Joseph J. Vitti et al.   Annual Review of Genetics

Genetic diversity and population structure assessed by SSR and SNP markers in a large germplasm collection of grape

(2013) Francesco Emanuelli et al.   BMC PLANT BIOLOGY

The High Polyphenol Content of Grapevine Cultivar Tannat Berries Is Conferred Primarily by Genes That Are Not Shared with the Reference Genome

(2013) C. Da Silva et al.   PLANT CELL

Grapevine powdery mildew resistance and susceptibility loci identified on a high-resolution SNP map

(2013) Paola Barba et al.   THEORETICAL AND APPLIED GENETICS

The effects of artificial selection on sugar metabolism and transporter genes in grape

(2013) Haiping Xin et al.   Tree Genetics & Genomes

Improving fruit and wine: what does genomics have to offer?

(2013) Sean Myles   TRENDS IN GENETICS

diveRsity: AnRpackage for the estimation and exploration of population genetics parameters and their associated errors

(2013) Kevin Keenan et al.   Methods in Ecology and Evolution

Construction of a high-density genetic map for grape using next generation restriction-site associated DNA sequencing

(2012) Nian Wang et al.   BMC PLANT BIOLOGY

Special features of RAD Sequencing data: implications for genotyping

(2012) John W. Davey et al.   MOLECULAR ECOLOGY

2b-RAD: a simple and flexible method for genome-wide genotyping

(2012) Shi Wang et al.   NATURE METHODS

Genetic diversity, structure, and patterns of differentiation in the genus Vitis

(2012) M. Aradhya et al.   PLANT SYSTEMATICS AND EVOLUTION

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Single-nucleotide polymorphism discovery by high-throughput sequencing in sorghum

(2011) James C Nelson et al.   BMC GENOMICS

Identification of SNP and SSR markers in eggplant using RAD tag sequencing

(2011) Lorenzo Barchi et al.   BMC GENOMICS

RADSeq: next-generation population genetics

(2011) J. W. Davey et al.   Briefings in Functional Genomics

Low-coverage sequencing: Implications for design of complex trait association studies

(2011) Y. Li et al.   GENOME RESEARCH

Estimating population divergence time and phylogeny from single-nucleotide polymorphisms data with outgroup ascertainment bias

(2011) YONG WANG et al.   MOLECULAR ECOLOGY

Genetic diversity of wild grapevine populations in Spain and their genetic relationships with cultivated grapevines

(2011) M. T. DE ANDRÉS et al.   MOLECULAR ECOLOGY

Multiple reference genomes and transcriptomes for Arabidopsis thaliana

(2011) Xiangchao Gan et al.   NATURE

Genetic structure and domestication history of the grape

(2011) Sean Myles et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Rapid Genomic Characterization of the Genus Vitis

(2010) Sean Myles et al.   PLoS One

BFAST: An Alignment Tool for Large Scale Genome Resequencing

(2009) Nils Homer et al.   PLoS One

Array-based high-throughput DNA markers for crop improvement

(2008) P K Gupta et al.   HEREDITY

Low Level of Pollen-Mediated Gene Flow from Cultivated to Wild Grapevine: Consequences for the Evolution of the Endangered Subspecies Vitis vinifera L. subsp. silvestris

(2008) Manuel Di Vecchi-Staraz et al.   JOURNAL OF HEREDITY

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One