Simultaneous genome-wide gene expression and transcript isoform profiling in the human malaria parasite

An integrative analysis of small molecule transcriptional responses in the human malaria parasite Plasmodium falciparum

(2015) Geoffrey H. Siwo et al.   BMC GENOMICS

Predicting functional and regulatory divergence of a drug resistance transporter gene in the human malaria parasite

(2015) Geoffrey H Siwo et al.   BMC GENOMICS

Diminishing returns in next-generation sequencing (NGS) transcriptome data

(2015) Rex Lei et al.   GENE

The role played by alternative splicing in antigenic variability in human endo-parasites

(2014) Rodney Hull et al.   Parasites & Vectors

New Agilent platform DNA microarrays for transcriptome analysis of Plasmodium falciparum and Plasmodium berghei for the malaria research community

(2012) Björn F C Kafsack et al.   MALARIA JOURNAL

Microarrays, deep sequencing and the true measure of the transcriptome

(2011) John H Malone et al.   BMC BIOLOGY

Directional gene expression and antisense transcripts in sexual and asexual stages of Plasmodium falciparum

(2011) María J López-Barragán et al.   BMC GENOMICS

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

RNA-Seq analysis of splicing in Plasmodium falciparum uncovers new splice junctions, alternative splicing and splicing of antisense transcripts

(2011) K. Sorber et al.   NUCLEIC ACIDS RESEARCH

Sequence-Dependent Fluorescence of Cyanine Dyes on Microarrays

(2011) Christy Agbavwe et al.   PLoS One

A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs

(2011) Kate M Broadbent et al.   GENOME BIOLOGY

Plasmodium falciparum spermidine synthase inhibition results in unique perturbation-specific effects observed on transcript, protein and metabolite levels

(2010) John VW Becker et al.   BMC GENOMICS

New insights into the blood-stage transcriptome ofPlasmodium falciparumusing RNA-Seq

(2010) Thomas D. Otto et al.   MOLECULAR MICROBIOLOGY

CDD: a Conserved Domain Database for the functional annotation of proteins

(2010) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Histone Deacetylases Play a Major Role in the Transcriptional Regulation of the Plasmodium falciparum Life Cycle

(2010) Balbir K. Chaal et al.   PLoS Pathogens

Transcriptional profiling of growth perturbations of the human malaria parasite Plasmodium falciparum

(2009) Guangan Hu et al.   NATURE BIOTECHNOLOGY

A small-scale systematic analysis of alternative splicing in Plasmodium falciparum

(2009) Hideyuki Iriko et al.   PARASITOLOGY INTERNATIONAL

In vivo profiles in malaria are consistent with a novel physiological state

(2009) D. Wirth et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene Expression and Isoform Variation Analysis using Affymetrix Exon Arrays

(2008) Amandine Bemmo et al.   BMC GENOMICS

Comparative genomic profiling of Dutch clinical Bordetella pertussis isolates using DNA microarrays: Identification of genes absent from epidemic strains

(2008) Audrey J King et al.   BMC GENOMICS

Identification of common genetic variants that account for transcript isoform variation between human populations

(2008) Wei Zhang et al.   HUMAN GENETICS

Co-inhibition ofPlasmodium falciparum S-Adenosylmethionine Decarboxylase/Ornithine Decarboxylase Reveals Perturbation-specific Compensatory Mechanisms by Transcriptome, Proteome, and Metabolome Analyses

(2008) Anna C. van Brummelen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Alternative splicing: A key mechanism for ankyrin-B functional diversity?

(2008) Ralph J. van Oort et al.   JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY

Genome-wide analysis of transcript isoform variation in humans

(2008) Tony Kwan et al.   NATURE GENETICS

PlasmoDB: a functional genomic database for malaria parasites

(2008) C. Aurrecoechea et al.   NUCLEIC ACIDS RESEARCH

Regulatory Hotspots in the Malaria Parasite Genome Dictate Transcriptional Variation

(2008) Joseph M Gonzales et al.   PLOS BIOLOGY

An Erythrocyte Vesicle Protein Exported by the Malaria Parasite Promotes Tubovesicular Lipid Import from the Host Cell Surface

(2008) Pamela A. Tamez et al.   PLoS Pathogens

Genome-wide discovery and verification of novel structured RNAs in Plasmodium falciparum

(2007) T. Mourier et al.   GENOME RESEARCH