Global transcriptome and coexpression network analyses reveal cultivar-specific molecular signatures associated with seed development and seed size/weight determination in chickpea

Signaling pathways of seed size control in plants

(2016) Na Li et al.   CURRENT OPINION IN PLANT BIOLOGY

QTL-seq for rapid identification of candidate genes for 100-seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea

(2016) Vikas K. Singh et al.   PLANT BIOTECHNOLOGY JOURNAL

WRINKLED1Rescues Feedback Inhibition of Fatty Acid Synthesis in Hydroxylase-Expressing Seeds

(2016) Neil D. Adhikari et al.   PLANT PHYSIOLOGY

EcoTILLING-Based Association Mapping Efficiently Delineates Functionally Relevant Natural Allelic Variants of Candidate Genes Governing Agronomic Traits in Chickpea

(2016) Deepak Bajaj et al.   Frontiers in Plant Science

Transcriptome analyses reveal genotype- and developmental stage-specific molecular responses to drought and salinity stresses in chickpea

(2016) Rohini Garg et al.   Scientific Reports

Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines

(2015) Neelam R. Redekar et al.   BMC GENOMICS

Non-specific lipid transfer proteins in plants: presenting new advances and an integrated functional analysis

(2015) Fang Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

RNA Sequencing of Laser-Capture Microdissected Compartments of the Maize Kernel Identifies Regulatory Modules Associated with Endosperm Cell Differentiation

(2015) Junpeng Zhan et al.   PLANT CELL

A lipid transfer protein, OsLTPL36, is essential for seed development and seed quality in rice

(2015) Xin Wang et al.   PLANT SCIENCE

Ultra-high density intra-specific genetic linkage maps accelerate identification of functionally relevant molecular tags governing important agronomic traits in chickpea

(2015) Alice Kujur et al.   Scientific Reports

High-density linkage map construction and mapping of seed trait QTLs in chickpea (Cicer arietinum L.) using Genotyping-by-Sequencing (GBS)

(2015) Subodh Verma et al.   Scientific Reports

A combinatorial approach of comprehensive QTL-based comparative genome mapping and transcript profiling identified a seed weight-regulating candidate gene in chickpea

(2015) Deepak Bajaj et al.   Scientific Reports

An Integrated Genomic Approach for Rapid Delineation of Candidate Genes Regulating Agro-Morphological Traits in Chickpea

(2014) Maneesha S. Saxena et al.   DNA RESEARCH

TOPOISOMERASE 6B is involved in chromatin remodelling associated with control of carbon partitioning into secondary metabolites and cell walls, and epidermal morphogenesis in Arabidopsis

(2014) A. Mittal et al.   JOURNAL OF EXPERIMENTAL BOTANY

Phenotypic and Transcriptional Analysis of Divergently Selected Maize Populations Reveals the Role of Developmental Timing in Seed Size Determination

(2014) R. S. Sekhon et al.   PLANT PHYSIOLOGY

Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications

(2014) Himabindu Kudapa et al.   PLoS One

Current perspectives on the hormonal control of seed development in Arabidopsis and maize: a focus on auxin

(2014) Antonella Locascio et al.   Frontiers in Plant Science

Genomic dissection of the seed

(2014) Michael G. Becker et al.   Frontiers in Plant Science

Cell cycle control and seed development

(2014) Ricardo A. Dante et al.   Frontiers in Plant Science

Seed-Development Programs: A Systems Biology–Based Comparison Between Dicots and Monocots

(2013) Nese Sreenivasulu et al.   Annual Review of Plant Biology

Functionally Relevant Microsatellite Markers From Chickpea Transcription Factor Genes for Efficient Genotyping Applications and Trait Association Mapping

(2013) A. Kujur et al.   DNA RESEARCH

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

(2013) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

A global view of transcriptome dynamics during flower development in chickpea by deep sequencing

(2013) Vikash K. Singh et al.   PLANT BIOTECHNOLOGY JOURNAL

A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.)

(2013) Mukesh Jain et al.   PLANT JOURNAL

Brassinosteroid Regulates Seed Size and Shape in Arabidopsis

(2013) W.-B. Jiang et al.   PLANT PHYSIOLOGY

A Developmental Transcriptional Network for Maize Defines Coexpression Modules

(2013) G. S. Downs et al.   PLANT PHYSIOLOGY

A Regulatory Network-Based Approach Dissects Late Maturation Processes Related to the Acquisition of Desiccation Tolerance and Longevity of Medicago truncatula Seeds

(2013) J. Verdier et al.   PLANT PHYSIOLOGY

Association Analysis of Genomic Loci Important for Grain Weight Control in Elite Common Wheat Varieties Cultivated with Variable Water and Fertiliser Supply

(2013) Kunpu Zhang et al.   PLoS One

WRINKLED1, A Ubiquitous Regulator in Oil Accumulating Tissues from Arabidopsis Embryos to Oil Palm Mesocarp

(2013) Wei Ma et al.   PLoS One

Comprehensive developmental profiles of gene activity in regions and subregions of the Arabidopsis seed

(2013) M. F. Belmonte et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MCM8 Is Required for a Pathway of Meiotic Double-Strand Break Repair Independent of DMC1 in Arabidopsis thaliana

(2013) Wayne Crismani et al.   PLoS Genetics

WRINKLED Transcription Factors Orchestrate Tissue-Specific Regulation of Fatty Acid Biosynthesis in Arabidopsis

(2012) A. To et al.   PLANT CELL

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

Transcription factors regulating the progression of monocot and dicot seed development

(2011) Pinky Agarwal et al.   BIOESSAYS

Subfunctionalization of Cellulose Synthases in Seed Coat Epidermal Cells Mediates Secondary Radial Wall Synthesis and Mucilage Attachment

(2011) Venugopal Mendu et al.   PLANT PHYSIOLOGY

Mutations in MYB3R1 and MYB3R4 Cause Pleiotropic Developmental Defects and Preferential Down-Regulation of Multiple G2/M-Specific Genes in Arabidopsis

(2011) N. Haga et al.   PLANT PHYSIOLOGY

Gene Discovery and Tissue-Specific Transcriptome Analysis in Chickpea with Massively Parallel Pyrosequencing and Web Resource Development

(2011) R. Garg et al.   PLANT PHYSIOLOGY

Validation of internal control genes for quantitative gene expression studies in chickpea (Cicer arietinum L.)

(2010) Rohini Garg et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Flux of transcript patterns during soybean seed development

(2010) Sarah I Jones et al.   BMC GENOMICS

Transcriptional and hormonal signaling control of Arabidopsis seed development

(2010) Xiaodong Sun et al.   CURRENT OPINION IN PLANT BIOLOGY

The evolution of seeds

(2010) Ada Linkies et al.   NEW PHYTOLOGIST

The Sterol Methyltransferases SMT1, SMT2, and SMT3 Influence Arabidopsis Development through Nonbrassinosteroid Products

(2010) F. Carland et al.   PLANT PHYSIOLOGY

CELLULOSE SYNTHASE9 Serves a Nonredundant Role in Secondary Cell Wall Synthesis in Arabidopsis Epidermal Testa Cells

(2010) J. Stork et al.   PLANT PHYSIOLOGY

Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors

(2010) B. H. Le et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resource distribution and the trade-off between seed number and seed weight: a comparison across crop species

(2009) B.L. Gambín et al.   ANNALS OF APPLIED BIOLOGY

A Role for Multiple Circadian Clock Genes in the Response to Signals That Break Seed Dormancy in Arabidopsis

(2009) S. Penfield et al.   PLANT CELL

The BURP domain protein AtUSPL1 of Arabidopsis thaliana is destined to the protein storage vacuoles and overexpression of the cognate gene distorts seed development

(2009) Le Van Son et al.   PLANT MOLECULAR BIOLOGY

ArabidopsisORC1 is a PHD-containing H3K4me3 effector that regulates transcription

(2009) María de la Paz Sanchez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Laser microdissection of Arabidopsis cells at the powdery mildew infection site reveals site-specific processes and regulators

(2009) D. Chandran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

A SNARE Complex Unique to Seed Plants Is Required for Protein Storage Vacuole Biogenesis and Seed Development of Arabidopsis thaliana

(2008) K. Ebine et al.   PLANT CELL

Deciphering gene regulatory networks that control seed development and maturation in Arabidopsis

(2008) Monica Santos-Mendoza et al.   PLANT JOURNAL

SNAREs: Cogs and Coordinators in Signaling and Development

(2008) D. C. Bassham et al.   PLANT PHYSIOLOGY