H3K23me1 is an evolutionarily conserved histone modification associated with CG DNA methylation in Arabidopsis

Methylation of histone H3K23 blocks DNA damage in pericentric heterochromatin during meiosis

(2014) Romeo Papazyan et al.   eLife

The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin

(2013) Assaf Zemach et al.   CELL

Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants

(2012) Jiamu Du et al.   CELL

Role of DNA methylation in growth and differentiation inPhyscomitrella patensand characterization of cytosine DNA methyltransferases

(2012) Garima Malik et al.   FEBS Journal

Quantitative Proteomics Reveals That the Specific Methyltransferases Txr1p and Ezl2p Differentially Affect the Mono-, Di- and Trimethylation States of Histone H3 Lysine 27 (H3K27)

(2012) Chunchao Zhang et al.   MOLECULAR & CELLULAR PROTEOMICS

Histone Lysine Methylation Dynamics: Establishment, Regulation, and Biological Impact

(2012) Joshua C. Black et al.   MOLECULAR CELL

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Histone methylation: a dynamic mark in health, disease and inheritance

(2012) Eric L. Greer et al.   NATURE REVIEWS GENETICS

Integrative analysis of chromatin states in Arabidopsis identified potential regulatory mechanisms for natural antisense transcript production

(2012) Chongyuan Luo et al.   PLANT JOURNAL

Distinct modes of DNA accessibility in plant chromatin

(2012) Huan Shu et al.   Nature Communications

The SET-Domain Protein SUVR5 Mediates H3K9me2 Deposition and Silencing at Stimulus Response Genes in a DNA Methylation–Independent Manner

(2012) Elena Caro et al.   PLoS Genetics

Proteogenomic characterization and mapping of nucleosomes decoded by Brd and HP1 proteins

(2012) Gary LeRoy et al.   GENOME BIOLOGY

nucleR: a package for non-parametric nucleosome positioning

(2011) O. Flores et al.   BIOINFORMATICS

Identification of 67 Histone Marks and Histone Lysine Crotonylation as a New Type of Histone Modification

(2011) Minjia Tan et al.   CELL

Regulation and function of DNA methylation in plants and animals

(2011) Xin-Jian He et al.   CELL RESEARCH

Regulation of chromatin by histone modifications

(2011) Andrew J Bannister et al.   CELL RESEARCH

The CW domain, a new histone recognition module in chromatin proteins

(2011) Verena Hoppmann et al.   EMBO JOURNAL

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

(2011) François Roudier et al.   EMBO JOURNAL

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Histone Methylation in Higher Plants

(2010) Chunyan Liu et al.   Annual Review of Plant Biology

Regulatory mechanism of histone epigenetic modifications in plants

(2010) Dao-Xiu Zhou   Epigenetics

Systematic Identification of Methyllysine-Driven Interactions for Histone and Nonhistone Targets

(2010) Huadong Liu et al.   JOURNAL OF PROTEOME RESEARCH

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

Genome-wide profiling of histone H3 lysine 9 acetylation and dimethylation in Arabidopsis reveals correlation between multiple histone marks and gene expression

(2010) Junli Zhou et al.   PLANT MOLECULAR BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Arabidopsis MSI1 Is Required for Negative Regulation of the Response to Drought Stress

(2009) Cristina Alexandre et al.   Molecular Plant

Dynamic Landscapes of Four Histone Modifications during Deetiolation in Arabidopsis

(2009) J.-B. F. Charron et al.   PLANT CELL

AGRONOMICS1: A New Resource for Arabidopsis Transcriptome Profiling

(2009) H. Rehrauer et al.   PLANT PHYSIOLOGY

The Chromodomain of LIKE HETEROCHROMATIN PROTEIN 1 Is Essential for H3K27me3 Binding and Function during Arabidopsis Development

(2009) Vivien Exner et al.   PLoS One

Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana

(2009) Xiaoyu Zhang et al.   GENOME BIOLOGY

The ankyrin repeats of G9a and GLP histone methyltransferases are mono- and dimethyllysine binding modules

(2008) Robert E Collins et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Effective, homogeneous and transient interference with cytosine methylation in plant genomic DNA by zebularine

(2008) Tuncay Baubec et al.   PLANT JOURNAL

Genome-Wide Association of Histone H3 Lysine Nine Methylation with CHG DNA Methylation in Arabidopsis thaliana

(2008) Yana V. Bernatavichute et al.   PLoS One