Active DNA demethylation: mechanism and role in plant development

Exploiting induced and natural epigenetic variation for crop improvement

(2017) Nathan M. Springer et al.   NATURE REVIEWS GENETICS

Critical roles of DNA demethylation in the activation of ripening-induced genes and inhibition of ripening-repressed genes in tomato fruit

(2017) Zhaobo Lang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Control of DEMETER DNA demethylase gene transcription in male and female gamete companion cells inArabidopsis thaliana

(2017) Jin-Sup Park et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Novel Imprinted Gene NUWA Controls Mitochondrial Function in Early Seed Development in Arabidopsis

(2017) Shan He et al.   PLoS Genetics

A pair of transposon-derived proteins function in a histone acetyltransferase complex for active DNA demethylation

(2016) Cheng-Guo Duan et al.   CELL RESEARCH

From profiles to function in epigenomics

(2016) Stefan H. Stricker et al.   NATURE REVIEWS GENETICS

DNA demethylation is initiated in the central cells ofArabidopsisand rice

(2016) Kyunghyuk Park et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The cytosolic Fe-S cluster assembly component MET18 is required for the full enzymatic activity of ROS1 in active DNA demethylation

(2016) Xiaokang Wang et al.   Scientific Reports

A CRISPR-based approach for targeted DNA demethylation

(2016) Xingxing Xu et al.   Cell Discovery

Genome-wide high-resolution mapping of DNA methylation identifies epigenetic variation across embryo and endosperm in Maize (Zea may)

(2015) Pengfei Wang et al.   BMC GENOMICS

A DNA ligase required for active DNA demethylation and genomic imprinting in Arabidopsis

(2015) Yan Li et al.   CELL RESEARCH

The Methyl-CpG-Binding Protein MBD7 Facilitates Active DNA Demethylation to Limit DNA Hyper-Methylation and Transcriptional Gene Silencing

(2015) Zhaobo Lang et al.   MOLECULAR CELL

RNA-directed DNA methylation in plants

(2015) Ali Movahedi et al.   PLANT CELL REPORTS

A DEMETER-like DNA demethylase governs tomato fruit ripening

(2015) Ruie Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulatory link between DNA methylation and active demethylation inArabidopsis

(2015) Mingguang Lei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of Active DNA Demethylation by a Methyl-CpG-Binding Domain Protein in Arabidopsis thaliana

(2015) Qi Li et al.   PLoS Genetics

An AP Endonuclease Functions in Active DNA Demethylation and Gene Imprinting in Arabidopsis

(2015) Yan Li et al.   PLoS Genetics

MET18 Connects the Cytosolic Iron-Sulfur Cluster Assembly Pathway to Active DNA Demethylation in Arabidopsis

(2015) Cheng-Guo Duan et al.   PLoS Genetics

Methylation-Sensitive Expression of a DNA Demethylase Gene Serves As an Epigenetic Rheostat

(2015) Ben P. Williams et al.   PLoS Genetics

Noncoding Transcription by Alternative RNA Polymerases Dynamically Regulates an Auxin-Driven Chromatin Loop

(2014) Federico Ariel et al.   MOLECULAR CELL

Regulation of Active DNA Demethylation by an α-Crystallin Domain Protein in Arabidopsis

(2014) Weiqiang Qian et al.   MOLECULAR CELL

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

(2014) Marjori A. Matzke et al.   NATURE REVIEWS GENETICS

AP endonucleases process 5-methylcytosine excision intermediates during active DNA demethylation in Arabidopsis

(2014) Jiyoon Lee et al.   NUCLEIC ACIDS RESEARCH

REPRESSOR OF SILENCING5 Encodes a Member of the Small Heat Shock Protein Family and Is Required for DNA Demethylation in Arabidopsis

(2014) Y. Zhao et al.   PLANT CELL

Epigenetic role for the conserved Fe-S cluster biogenesis protein AtDRE2 inArabidopsis thaliana

(2014) Diana Mihaela Buzas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Overproduction of stomatal lineage cells in Arabidopsis mutants defective in active DNA demethylation

(2014) Chizuko Yamamuro et al.   Nature Communications

Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening

(2013) Silin Zhong et al.   NATURE BIOTECHNOLOGY

The role ofArabidopsis thalianaNAR1, a cytosolic iron-sulfur cluster assembly component, in gametophytic gene expression and oxidative stress responses in vegetative tissue

(2013) Miyuki Nakamura et al.   NEW PHYTOLOGIST

Differential Effects of the Peptides Stomagen, EPF1 and EPF2 on Activation of MAP Kinase MPK6 and the SPCH Protein Level

(2013) Pawan Kumar Jewaria et al.   PLANT AND CELL PHYSIOLOGY

Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm

(2013) J. A. Rodrigues et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reprogramming of DNA Methylation in Pollen Guides Epigenetic Inheritance via Small RNA

(2012) Joseph P. Calarco et al.   CELL

A DNA 3′ Phosphatase Functions in Active DNA Demethylation in Arabidopsis

(2012) María Isabel Martínez-Macías et al.   MOLECULAR CELL

The DUF59 Family GeneAE7Acts in the Cytosolic Iron-Sulfur Cluster Assembly Pathway to Maintain Nuclear Genome Integrity inArabidopsis

(2012) Dexian Luo et al.   PLANT CELL

A null mutation of ROS1a for DNA demethylation in rice is not transmittable to progeny

(2012) Akemi Ono et al.   PLANT JOURNAL

Histone H1 affects gene imprinting and DNA methylation in Arabidopsis

(2012) Matthew Rea et al.   PLANT JOURNAL

Structural genes of wheat and barley 5-methylcytosine DNA glycosylases and their potential applications for human health

(2012) S. Wen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Antisilencing role of the RNA-directed DNA methylation pathway and a histone acetyltransferase in Arabidopsis

(2012) X. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Histone Acetyltransferase Regulates Active DNA Demethylation in Arabidopsis

(2012) W. Qian et al.   SCIENCE

Active DNA Demethylation in Plant Companion Cells Reinforces Transposon Methylation in Gametes

(2012) C. A. Ibarra et al.   SCIENCE

HMG Domain Containing SSRP1 Is Required for DNA Demethylation and Genomic Imprinting in Arabidopsis

(2011) Yoko Ikeda et al.   DEVELOPMENTAL CELL

Parent-of-Origin Effects on Gene Expression and DNA Methylation in the Maize Endosperm

(2011) A. J. Waters et al.   PLANT CELL

Function of the DEMETER DNA glycosylase in the Arabidopsis thaliana male gametophyte

(2011) V. K. Schoft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Extensive, clustered parental imprinting of protein-coding and noncoding RNAs in developing maize endosperm

(2011) M. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Wide Transcript Profiling of Endosperm without Paternal Contribution Identifies Parent-of-Origin–Dependent Regulation of AGAMOUS-LIKE36

(2011) Reza Shirzadi et al.   PLoS Genetics

A Genome-Wide Survey of Imprinted Genes in Rice Seeds Reveals Imprinting Primarily Occurs in the Endosperm

(2011) Ming Luo et al.   PLoS Genetics

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

Effective shutdown in the expression of celiac disease-related wheat gliadin T-cell epitopes by RNA interference

(2010) J. Gil-Humanes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Domain structure of the DEMETER 5-methylcytosine DNA glycosylase

(2010) Y. G. Mok et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Local DNA hypomethylation activates genes in rice endosperm

(2010) A. Zemach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Active DNA Demethylation Mediated by DNA Glycosylases

(2009) Jian-Kang Zhu   Annual Review of Genetics

Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen

(2009) R. Keith Slotkin et al.   CELL

The Signaling Peptide EPF2 Controls Asymmetric Cell Divisions during Stomatal Development

(2009) Lee Hunt et al.   CURRENT BIOLOGY

Polycomb group-dependent imprinting of the actin regulator AtFH5 regulates morphogenesis in Arabidopsis thaliana

(2009) J. N. F. Gerald et al.   DEVELOPMENT

DNA LIGASE I exerts a maternal effect on seed development in Arabidopsis thaliana

(2009) S. Andreuzza et al.   DEVELOPMENT

Epidermal Cell Density is Autoregulated via a Secretory Peptide, EPIDERMAL PATTERNING FACTOR 2 in Arabidopsis Leaves

(2009) Kenta Hara et al.   PLANT AND CELL PHYSIOLOGY

Genome-Wide Demethylation of Arabidopsis Endosperm

(2009) T.-F. Hsieh et al.   SCIENCE

Detailed Analysis of the Expression of an Alpha-gliadin Promoter and the Deposition of Alpha-gliadin Protein During Wheat Grain Development

(2008) T. W. J. M. Van Herpen et al.   ANNALS OF BOTANY

ROS3 is an RNA-binding protein required for DNA demethylation in Arabidopsis

(2008) Xianwu Zheng et al.   NATURE

MATERNALLY EXPRESSED PAB C-TERMINAL, a Novel Imprinted Gene in Arabidopsis, Encodes the Conserved C-Terminal Domain of Polyadenylate Binding Proteins

(2008) S. Tiwari et al.   PLANT CELL

Arabidopsis DEMETER-LIKE proteins DML2 and DML3 are required for appropriate distribution of DNA methylation marks

(2008) Ana Pilar Ortega-Galisteo et al.   PLANT MOLECULAR BIOLOGY

Tissue dependent variations of DNA methylation and endoreduplication levels during tomato fruit development and ripening

(2008) E. Teyssier et al.   PLANTA

Retinoblastoma and Its Binding Partner MSI1 Control Imprinting in Arabidopsis

(2008) Pauline E Jullien et al.   PLOS BIOLOGY