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Title
From profiles to function in epigenomics
Authors
Keywords
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Journal
NATURE REVIEWS GENETICS
Volume 18, Issue 1, Pages 51-66
Publisher
Springer Nature
Online
2016-11-21
DOI
10.1038/nrg.2016.138
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- (2016) Aleksandar Vojta et al. NUCLEIC ACIDS RESEARCH
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- (2016) L. Bintu et al. SCIENCE
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- (2016) Emanuele Libertini et al. Nature Communications
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- (2016) David Cano-Rodriguez et al. Nature Communications
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- (2016) Xingxing Xu et al. Cell Discovery
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- (2015) Tiphaine C Martin et al. BMC BIOINFORMATICS
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- (2012) Abu Nasar Siddique et al. JOURNAL OF MOLECULAR BIOLOGY
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- (2012) Allan Bradley et al. MAMMALIAN GENOME
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- (2012) Paul Delgado-Olguín et al. NATURE GENETICS
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- (2012) Michael M Hoffman et al. NATURE METHODS
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- (2012) Jason Ernst et al. NATURE METHODS
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- (2012) François Spitz et al. NATURE REVIEWS GENETICS
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- (2012) Magdalena A. Machnicka et al. NUCLEIC ACIDS RESEARCH
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- (2012) P. A. Latos et al. SCIENCE
- Systematic Localization of Common Disease-Associated Variation in Regulatory DNA
- (2012) M. T. Maurano et al. SCIENCE
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- (2012) Robert J. Schmitz et al. TRENDS IN PLANT SCIENCE
- Lysine methylation: beyond histones
- (2011) Xi Zhang et al. ACTA BIOCHIMICA ET BIOPHYSICA SINICA
- A Genetic Approach to the Transcriptional Regulation of Hox Gene Clusters
- (2011) Patrick Tschopp et al. Annual Review of Genetics
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- (2011) Monya Baker NATURE METHODS
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- (2010) Julie A. Law et al. NATURE REVIEWS GENETICS
- The RNA modification database, RNAMDB: 2011 update
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- (2009) Ryan Lister et al. NATURE
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- (2009) Ann-Marie Bröske et al. NATURE GENETICS
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- (2009) Rafael A Irizarry et al. NATURE GENETICS
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- (2009) E. Lieberman-Aiden et al. SCIENCE
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- (2008) M. R. Branco et al. GENES & DEVELOPMENT
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