De novo assembly of the zucchini genome reveals a whole-genome duplication associated with the origin of the Cucurbita genus
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Title
De novo
assembly of the zucchini genome reveals a whole-genome duplication associated with the origin of the Cucurbita
genus
Authors
Keywords
-
Journal
PLANT BIOTECHNOLOGY JOURNAL
Volume 16, Issue 6, Pages 1161-1171
Publisher
Wiley
Online
2017-11-07
DOI
10.1111/pbi.12860
References
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- (2015) Felipe A. Simão et al. BIOINFORMATICS
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- (2015) Martina Blümel et al. CURRENT OPINION IN BIOTECHNOLOGY
- Genetic relationships in Cucurbita pepo (pumpkin, squash, gourd) as viewed with high frequency oligonucleotide–targeting active gene (HFO–TAG) markers
- (2015) Harry S. Paris et al. GENETIC RESOURCES AND CROP EVOLUTION
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- Gourds and squashes (Cucurbitaspp.) adapted to megafaunal extinction and ecological anachronism through domestication
- (2015) Logan Kistler et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- An acorn squash (Cucurbita pepo ssp. ovifera) fruit and seed transcriptome as a resource for the study of fruit traits in Cucurbita
- (2015) Lindsay E Wyatt et al. Horticulture Research
- TCS: A New Multiple Sequence Alignment Reliability Measure to Estimate Alignment Accuracy and Improve Phylogenetic Tree Reconstruction
- (2014) Jia-Ming Chang et al. MOLECULAR BIOLOGY AND EVOLUTION
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries
- (2013) Richard M. Leggett et al. BIOINFORMATICS
- Involvement of ethylene biosynthesis and signalling in fruit set and early fruit development in zucchini squash (Cucurbita pepo L.)
- (2013) Cecilia Martínez et al. BMC PLANT BIOLOGY
- Ultrafast Approximation for Phylogenetic Bootstrap
- (2013) B. Q. Minh et al. MOLECULAR BIOLOGY AND EVOLUTION
- WebAUGUSTUS--a web service for training AUGUSTUS and predicting genes in eukaryotes
- (2013) K. J. Hoff et al. NUCLEIC ACIDS RESEARCH
- The sacred lotus genome provides insights into the evolution of flowering plants
- (2013) Yun Wang et al. PLANT JOURNAL
- MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations
- (2013) M. S. Campbell et al. PLANT PHYSIOLOGY
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- High-throughput SNP genotyping in Cucurbita pepo for map construction and quantitative trait loci mapping
- (2012) Cristina Esteras et al. BMC GENOMICS
- Parallel Evolution Under Domestication and Phenotypic Differentiation of the Cultivated Subspecies of Cucurbita pepo (Cucurbitaceae)
- (2012) Harry S. Paris et al. ECONOMIC BOTANY
- Genome-scale coestimation of species and gene trees
- (2012) B. Boussau et al. GENOME RESEARCH
- Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential
- (2012) Gengyun Zhang et al. NATURE BIOTECHNOLOGY
- The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions
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- The genome of melon (Cucumis melo L.)
- (2012) J. Garcia-Mas et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
- (2012) Ruibang Luo et al. GigaScience
- A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
- (2011) Guillaume Marçais et al. BIOINFORMATICS
- Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)
- (2011) José Blanca et al. BMC GENOMICS
- Genetic diversity of Spanish Cucurbita pepo landraces: an unexploited resource for summer squash breeding
- (2011) Gelsomina Formisano et al. GENETIC RESOURCES AND CROP EVOLUTION
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
- (2011) Robert J. Elshire et al. PLoS One
- REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
- (2011) Fran Supek et al. PLoS One
- Scaffolding pre-assembled contigs using SSPACE
- (2010) Marten Boetzer et al. BIOINFORMATICS
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- (2010) Jeremy Schmutz et al. NATURE
- The Gypsy Database (GyDB) of mobile genetic elements: release 2.0
- (2010) C. Llorens et al. NUCLEIC ACIDS RESEARCH
- MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences
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- (2008) David Ellinghaus et al. BMC BIOINFORMATICS
- Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps
- (2008) H. Tang et al. GENOME RESEARCH
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- (2008) D. Posada MOLECULAR BIOLOGY AND EVOLUTION
- Kalign2: high-performance multiple alignment of protein and nucleotide sequences allowing external features
- (2008) Timo Lassmann et al. NUCLEIC ACIDS RESEARCH
- Gourds afloat: a dated phylogeny reveals an Asian origin of the gourd family (Cucurbitaceae) and numerous oversea dispersal events
- (2008) H. Schaefer et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
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- Microsatellites for the genus Cucurbita and an SSR-based genetic linkage map of Cucurbita pepo L.
- (2008) L. Gong et al. THEORETICAL AND APPLIED GENETICS
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