Transcriptomic alterations in the brain of painted turtles (Chrysemys picta) developmentally exposed to bisphenol A or ethinyl estradiol

Combining multiple tools outperforms individual methods in gene set enrichment analyses

(2016) Monther Alhamdoosh et al.   BIOINFORMATICS

The influence of breeding strategy, reproductive stage, and tissue type on transcript variability in fish

(2016) David A. Dreier et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Analysis of transcriptional profiles of Saccharomyces cerevisiae exposed to bisphenol A

(2016) Ceyhun Bereketoglu et al.   CURRENT GENETICS

Effects of developmental exposure to bisphenol A and ethinyl estradiol on spatial navigational learning and memory in painted turtles ( Chrysemys picta )

(2016) Lindsey K. Manshack et al.   HORMONES AND BEHAVIOR

Pharmacological evidence is consistent with a prominent role of spatial memory in complex navigation

(2016) Timothy C. Roth et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

An integrative data analysis platform for gene set analysis and knowledge discovery in a data warehouse framework

(2016) Yi-An Chen et al.   Database-The Journal of Biological Databases and Curation

Estrogenic Effects of Several BPA Analogs in the Developing Zebrafish Brain

(2016) Joel Cano-Nicolau et al.   Frontiers in Neuroscience

Dependence of Hippocampal Function on ERRγ-Regulated Mitochondrial Metabolism

(2015) Liming Pei et al.   Cell Metabolism

ERRs Mediate a Metabolic Switch Required for Somatic Cell Reprogramming to Pluripotency

(2015) Yasuyuki S. Kida et al.   Cell Stem Cell

Estrogen Receptor 1 (ESR1; ERα), not ESR2 (ERβ), Modulates Estrogen-Induced Sex Reversal in the American Alligator, a Species With Temperature-Dependent Sex Determination

(2015) Satomi Kohno et al.   ENDOCRINOLOGY

Developmental exposure to bisphenol A (BPA) alters sexual differentiation in painted turtles (Chrysemys picta)

(2015) Caitlin M. Jandegian et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Effects of the environmental estrogenic contaminants bisphenol A and 17α-ethinyl estradiol on sexual development and adult behaviors in aquatic wildlife species

(2015) Ramji K. Bhandari et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Evolution of the hippocampus in reptiles and birds

(2015) Georg F. Striedter   JOURNAL OF COMPARATIVE NEUROLOGY

Reducing Ribosomal Protein S6 Kinase 1 Expression Improves Spatial Memory and Synaptic Plasticity in a Mouse Model of Alzheimer's Disease

(2015) A. Caccamo et al.   JOURNAL OF NEUROSCIENCE

A study on temporal trends and estimates of fate of Bisphenol A in agricultural soils after sewage sludge amendment

(2015) Zulin Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Developmental origins of neurotransmitter and transcriptome alterations in adult female zebrafish exposed to atrazine during embryogenesis

(2015) Sara E. Wirbisky et al.   TOXICOLOGY

Expression of aromatase in the embryonic brain of the olive ridley sea turtle (Lepidochelys olivacea), and the effect of bisphenol-A in sexually differentiated embryos

(2015) Patsy Gómez-Picos et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Ethinyl Estradiol and Other Human Pharmaceutical Estrogens in the Aquatic Environment: A Review of Recent Risk Assessment Data

(2014) James P. Laurenson et al.   AAPS Journal

Signaling related with biphasic effects of bisphenol A (BPA) on Sertoli cell proliferation: A comparative proteomic analysis

(2014) Li-Chen Ge et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Cloning of circadian rhythmic pathway genes and perturbation of oscillation patterns in endocrine disrupting chemicals (EDCs)-exposed mangrove killifish Kryptolebias marmoratus

(2014) Jae-Sung Rhee et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

Estrogen-related receptor γ is an in vivo receptor of bisphenol A

(2014) Marie Tohmé et al.   FASEB JOURNAL

Methylmercury-induced changes in gene transcription associated with neuroendocrine disruption in largemouth bass (Micropterus salmoides)

(2014) Catherine A. Richter et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

High Intake of Dietary Sugar Enhances Bisphenol A (BPA) Disruption and Reveals Ribosome-Mediated Pathways of Toxicity

(2014) Alan T. Branco et al.   GENETICS

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Transcriptomics of the fetal hypothalamic response to brachiocephalic occlusion and estradiol treatment

(2014) Charles E. Wood et al.   PHYSIOLOGICAL GENOMICS

Contaminants of emerging concern in fresh leachate from landfills in the conterminous United States

(2014) Jason R. Masoner et al.   Environmental Science-Processes & Impacts

High-throughput sequencing and pathway analysis reveal alteration of the pituitary transcriptome by 17α-ethynylestradiol (EE2) in female coho salmon, Oncorhynchus kisutch

(2013) Louisa B. Harding et al.   AQUATIC TOXICOLOGY

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

(2013) Ning Leng et al.   BIOINFORMATICS

Pathview: an R/Bioconductor package for pathway-based data integration and visualization

(2013) Weijun Luo et al.   BIOINFORMATICS

Estrogen: A master regulator of bioenergetic systems in the brain and body

(2013) Jamaica R. Rettberg et al.   FRONTIERS IN NEUROENDOCRINOLOGY

Multiple structurally distinct ERα mRNA variants in zebrafish are differentially expressed by tissue type, stage of development and estrogen exposure

(2013) Kellie A. Cotter et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Sexually Selected Traits: A Fundamental Framework for Studies on Behavioral Epigenetics

(2013) E. Jasarevic et al.   ILAR JOURNAL

Sex-specific epigenetic disruption and behavioral changes following low-dose in utero bisphenol A exposure

(2013) M. Kundakovic et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In ovo inhibition of steroid metabolism by bisphenol-A as a potential mechanism of endocrine disruption

(2013) S. G. Clairardin et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data

(2012) Richard N. Smith et al.   BIOINFORMATICS

Gene expression of ribosomal protein mRNA in Chironomus riparius: Effects of endocrine disruptor chemicals and antibiotics

(2012) Kiyun Park et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

Bisphenol A affects gene expression of gonadotropin-releasing hormones and type I GnRH receptors in brains of adult rare minnow Gobiocypris rarus

(2012) Fang Qin et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

Modulations in androgen and estrogen mediating genes and testicular response in male goldfish exposed to bisphenol A

(2012) Azadeh Hatef et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Nanomolar dose of bisphenol A rapidly modulates spinogenesis in adult hippocampal neurons

(2012) Nobuaki Tanabe et al.   MOLECULAR AND CELLULAR ENDOCRINOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Bisphenol A modulates expression of sex differentiation genes in the self-fertilizing fish, Kryptolebias marmoratus

(2011) Jae-Sung Rhee et al.   AQUATIC TOXICOLOGY

Disruption of the hypothalamic-pituitary-thyroid axis in zebrafish embryo–larvae following waterborne exposure to BDE-47, TBBPA and BPA

(2011) Winson K. Chan et al.   AQUATIC TOXICOLOGY

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Age and Sex-Related Changes in Rat Brain Mitochondrial Function

(2011) Rocío Guevara et al.   CELLULAR PHYSIOLOGY AND BIOCHEMISTRY

Novel cDNA sequences of aryl hydrocarbon receptors and gene expression in turtles (Chrysemys picta and Pseudemys scripta) exposed to different environments

(2011) Emily C. Marquez et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

Toxicogenomic and Phenotypic Analyses of Bisphenol-A Early-Life Exposure Toxicity in Zebrafish

(2011) Siew Hong Lam et al.   PLoS One

A transcriptomics-based biological framework for studying mechanisms of endocrine disruption in small fish species

(2010) Rong-Lin Wang et al.   AQUATIC TOXICOLOGY

Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data

(2010) F. Garcia-Alcalde et al.   BIOINFORMATICS

Role of acetylcholine in negative patterning in turtles (Chrysemys picta).

(2009) Alice Schade Powers et al.   BEHAVIORAL NEUROSCIENCE

GAGE: generally applicable gene set enrichment for pathway analysis

(2009) Weijun Luo et al.   BMC BIOINFORMATICS

Gene expression profiling to characterize sediment toxicity – a pilot study using Caenorhabditis elegans whole genome microarrays

(2009) Ralph Menzel et al.   BMC GENOMICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Estrogen regulation of glucose metabolism and mitochondrial function: Therapeutic implications for prevention of Alzheimer's disease☆

(2008) Roberta Diaz Brinton   ADVANCED DRUG DELIVERY REVIEWS

Genome-wide analysis of epigenomic alterations in fetal mouse forebrain after exposure to low doses of bisphenol A

(2008) Takeshi Yaoi et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Direct Evidence Revealing Structural Elements Essential for the High Binding Ability of Bisphenol A to Human Estrogen-Related Receptor-γ

(2007) Hiroyuki Okada et al.   ENVIRONMENTAL HEALTH PERSPECTIVES