The Cartography of UV-induced DNA Damage Formation and DNA Repair

Phylogenetic and Functional Classification of the Photolyase/Cryptochrome Family

(2017) Nuri Ozturk   PHOTOCHEMISTRY AND PHOTOBIOLOGY

Mechanisms of DNA Repair by Photolyase and Excision Nuclease (Nobel Lecture)

(2016) Aziz Sancar   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Nucleotide excision repair is impaired by binding of transcription factors to DNA

(2016) Radhakrishnan Sabarinathan et al.   NATURE

Differential DNA repair underlies mutation hotspots at active promoters in cancer genomes

(2016) Dilmi Perera et al.   NATURE

PostExcision Events in Human Nucleotide Excision Repair

(2016) Michael G. Kemp et al.   PHOTOCHEMISTRY AND PHOTOBIOLOGY

Chromosomal landscape of UV damage formation and repair at single-nucleotide resolution

(2016) Peng Mao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide kinetics of DNA excision repair in relation to chromatin state and mutagenesis

(2016) Sheera Adar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cisplatin DNA damage and repair maps of the human genome at single-nucleotide resolution

(2016) Jinchuan Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nanopore Detection of 8-Oxoguanine in the Human Telomere Repeat Sequence

(2015) Na An et al.   ACS Nano

Characterization of Interstrand DNA–DNA Cross-Links Using the α-Hemolysin Protein Nanopore

(2015) Xinyue Zhang et al.   ACS Nano

Electron Transfer Mechanisms of DNA Repair by Photolyase

(2015) Dongping Zhong   Annual Review of Physical Chemistry

Early Events of DNA Photodamage

(2015) Wolfgang J. Schreier et al.   Annual Review of Physical Chemistry

Historical perspective on the DNA damage response

(2015) Philip C. Hanawalt   DNA REPAIR

Genome-wide analysis of human global and transcription-coupled excision repair of UV damage at single-nucleotide resolution

(2015) Jinchuan Hu et al.   GENES & DEVELOPMENT

Break-seq reveals hydroxyurea-induced chromosome fragility as a result of unscheduled conflict between DNA replication and transcription

(2015) Elizabeth A. Hoffman et al.   GENOME RESEARCH

Lagging-strand replication shapes the mutational landscape of the genome

(2015) Martin A. M. Reijns et al.   NATURE

Genome-wide mapping of embedded ribonucleotides and other noncanonical nucleotides using emRiboSeq and EndoSeq

(2015) James Ding et al.   Nature Protocols

Charting oxidized methylcytosines at base resolution

(2015) Hao Wu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Charting oxidized methylcytosines at base resolution

(2015) Hao Wu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

3D-DIP-Chip: a microarray-based method to measure genomic DNA damage

(2015) James Rees Powell et al.   Scientific Reports

High resolution mapping of modified DNA nucleobases using excision repair enzymes

(2014) D. Suzi Bryan et al.   GENOME RESEARCH

Nucleotide Excision Repair in Human Cells

(2013) Jinchuan Hu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Nucleotide-resolution DNA double-strand break mapping by next-generation sequencing

(2013) Nicola Crosetto et al.   NATURE METHODS

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

(2013) Jason D Buenrostro et al.   NATURE METHODS

High-resolution characterization of CPD hotspot formation in human fibroblasts

(2013) A. G. Zavala et al.   NUCLEIC ACIDS RESEARCH

Comet-FISH with strand-specific probes reveals transcription-coupled repair of 8-oxoGuanine in human cells

(2013) Jia Guo et al.   NUCLEIC ACIDS RESEARCH

Highly specific and sensitive method for measuring nucleotide excision repair kinetics of ultraviolet photoproducts in human cells

(2013) Jun-Hyuk Choi et al.   NUCLEIC ACIDS RESEARCH

Translesion DNA Synthesis and Mutagenesis in Eukaryotes

(2013) J. E. Sale   Cold Spring Harbor Perspectives in Biology

DNA Base Damage by Reactive Oxygen Species, Oxidizing Agents, and UV Radiation

(2013) J. Cadet et al.   Cold Spring Harbor Perspectives in Biology

Detecting DNA Modifications from SMRT Sequencing Data by Modeling Sequence Context Dependence of Polymerase Kinetic

(2013) Zhixing Feng et al.   PLoS Computational Biology

Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases

(2012) E. E. Schadt et al.   GENOME RESEARCH

Mechanism of Release and Fate of Excised Oligonucleotides during Nucleotide Excision Repair

(2012) Michael G. Kemp et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Clustered Mutations in Yeast and in Human Cancers Can Arise from Damaged Long Single-Strand DNA Regions

(2012) Steven A. Roberts et al.   MOLECULAR CELL

Detection of ultra-rare mutations by next-generation sequencing

(2012) M. W. Schmitt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution

(2011) Ho Sung Rhee et al.   CELL

Determinants of nucleosome organization in primary human cells

(2011) Anton Valouev et al.   NATURE

A novel method for the genome-wide high resolution analysis of DNA damage

(2010) Yumin Teng et al.   NUCLEIC ACIDS RESEARCH

DNA repair gene polymorphisms and risk of cutaneous melanoma: a systematic review and meta-analysis

(2009) S. Mocellin et al.   CARCINOGENESIS

Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements)

(2009) Paul G. Giresi et al.   METHODS

Disorders of nucleotide excision repair: the genetic and molecular basis of heterogeneity

(2009) James E. Cleaver et al.   NATURE REVIEWS GENETICS

Dynamic Regulation of Nucleosome Positioning in the Human Genome

(2008) Dustin E. Schones et al.   CELL

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS