Identification of HDA15-PIF1 as a key repression module directing the transcriptional network of seed germination in the dark

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Expansins: roles in plant growth and potential applications in crop improvement

(2016) Prince Marowa et al.   PLANT CELL REPORTS

HDG11 upregulates cell-wall-loosening protein genes to promote root elongation in Arabidopsis

(2014) Ping Xu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcriptional Repression by Histone Deacetylases in Plants

(2014) Xuncheng Liu et al.   Molecular Plant

The Chromatin-Remodeling Factor PICKLE Integrates Brassinosteroid and Gibberellin Signaling during Skotomorphogenic Growth in Arabidopsis

(2014) D. Zhang et al.   PLANT CELL

PIFs: Systems Integrators in Plant Development

(2014) P. Leivar et al.   PLANT CELL

A histone methyltransferase inhibits seed germination by increasingPIF1 mRNA expression in imbibed seeds

(2014) Nayoung Lee et al.   PLANT JOURNAL

HISTONE DEACETYLASE 9 represses seedling traits inArabidopsis thalianadry seeds

(2014) Martijn van Zanten et al.   PLANT JOURNAL

Plant hormones and seed germination

(2013) Mohammad Miransari et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

HFR1 Sequesters PIF1 to Govern the Transcriptional Network Underlying Light-Initiated Seed Germination in Arabidopsis

(2013) H. Shi et al.   PLANT CELL

PHYTOCHROME INTERACTING FACTOR3 Associates with the Histone Deacetylase HDA15 in Repression of Chlorophyll Biosynthesis and Photosynthesis in Etiolated Arabidopsis Seedlings

(2013) X. Liu et al.   PLANT CELL

A Quartet of PIF bHLH Factors Provides a Transcriptionally Centered Signaling Hub That Regulates Seedling Morphogenesis through Differential Expression-Patterning of Shared Target Genes in Arabidopsis

(2013) Yu Zhang et al.   PLoS Genetics

Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling

(2012) Patricia Hornitschek et al.   PLANT JOURNAL

First off the mark: early seed germination

(2011) Karin Weitbrecht et al.   JOURNAL OF EXPERIMENTAL BOTANY

ABA treatment of germinating maize seeds induces VP1 gene expression and selective promoter-associated histone acetylation

(2011) Lu Zhang et al.   PHYSIOLOGIA PLANTARUM

Perception of UV-B by the Arabidopsis UVR8 Protein

(2011) L. Rizzini et al.   SCIENCE

PIFs: pivotal components in a cellular signaling hub

(2010) Pablo Leivar et al.   TRENDS IN PLANT SCIENCE

Dynamic Landscapes of Four Histone Modifications during Deetiolation in Arabidopsis

(2009) J.-B. F. Charron et al.   PLANT CELL

Genome-Wide Analysis of Genes Targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during Seed Germination in Arabidopsis

(2009) E. Oh et al.   PLANT CELL

The Rpd3/Hda1 family of lysine deacetylases: from bacteria and yeast to mice and men

(2008) Xiang-Jiao Yang et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Interaction of light and hormone signals in germinating seeds

(2008) Mitsunori Seo et al.   PLANT MOLECULAR BIOLOGY

PIF1 directly and indirectly regulates chlorophyll biosynthesis to optimize the greening process in Arabidopsis

(2008) J. Moon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA