sRNAnalyzer—a flexible and customizable small RNA sequencing data analysis pipeline
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
sRNAnalyzer—a flexible and customizable small RNA sequencing data analysis pipeline
Authors
Keywords
-
Journal
NUCLEIC ACIDS RESEARCH
Volume 45, Issue 21, Pages 12140-12151
Publisher
Oxford University Press (OUP)
Online
2017-10-12
DOI
10.1093/nar/gkx999
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
- (2015) Bastian Fromm et al. Annual Review of Genetics
- GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes
- (2015) Patricia P. Chan et al. NUCLEIC ACIDS RESEARCH
- sRNAtoolbox: an integrated collection of small RNA research tools
- (2015) Antonio Rueda et al. NUCLEIC ACIDS RESEARCH
- The extracellular RNA complement ofEscherichia coli
- (2015) Anubrata Ghosal et al. MicrobiologyOpen
- Transfer and functional consequences of dietary microRNAs in vertebrates: Concepts in search of corroboration
- (2014) Kenneth W. Witwer et al. BIOESSAYS
- tRNA fragments in human health and disease
- (2014) Paul Anderson et al. FEBS LETTERS
- Issues and Prospects of microRNA-Based Biomarkers in Blood and Other Body Fluids
- (2014) John Chevillet et al. MOLECULES
- Diverse and Widespread Contamination Evident in the Unmapped Depths of High Throughput Sequencing Data
- (2014) Richard W. Lusk PLoS One
- Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
- (2014) Amy H. Buck et al. Nature Communications
- Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues
- (2013) Leandro Castellano et al. NUCLEIC ACIDS RESEARCH
- High-Throughput miRNA and mRNA Sequencing of Paired Colorectal Normal, Tumor and Metastasis Tissues and Bioinformatic Modeling of miRNA-1 Therapeutic Applications
- (2013) Christina Röhr et al. PLoS One
- Real-time quantitative PCR and droplet digital PCR for plant miRNAs in mammalian blood provide little evidence for general uptake of dietary miRNAs
- (2013) Kenneth W. Witwer et al. RNA Biology
- The Spectrum of Circulating RNA: A Window into Systems Toxicology
- (2013) Kai Wang et al. TOXICOLOGICAL SCIENCES
- Performance comparison and evaluation of software tools for microRNA deep-sequencing data analysis
- (2012) Yue Li et al. NUCLEIC ACIDS RESEARCH
- The Complex Exogenous RNA Spectra in Human Plasma: An Interface with Human Gut Biota?
- (2012) Kai Wang et al. PLoS One
- Are all the miRBase-registered microRNAs true?
- (2012) Yijun Meng et al. RNA Biology
- Quality control and preprocessing of metagenomic datasets
- (2011) R. Schmieder et al. BIOINFORMATICS
- Extracellular microRNA: A new source of biomarkers
- (2011) Alton Etheridge et al. MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS
- MicroRNAs in body fluids—the mix of hormones and biomarkers
- (2011) Maria Angelica Cortez et al. Nature Reviews Clinical Oncology
- miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments
- (2011) M. Hackenberg et al. NUCLEIC ACIDS RESEARCH
- miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
- (2011) Marc R. Friedländer et al. NUCLEIC ACIDS RESEARCH
- Transfer RNA-derived fragments: origins, processing, and functions
- (2011) Andrew Sobala et al. Wiley Interdisciplinary Reviews-RNA
- The MicroRNA Spectrum in 12 Body Fluids
- (2010) J. A. Weber et al. CLINICAL CHEMISTRY
- RNA sequencing: advances, challenges and opportunities
- (2010) Fatih Ozsolak et al. NATURE REVIEWS GENETICS
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started