Meta-analysis of transcriptomic datasets identifies genes enriched in the mammalian circadian pacemaker

Regulating the Suprachiasmatic Nucleus (SCN) Circadian Clockwork: Interplay between Cell-Autonomous and Circuit-Level Mechanisms

(2017) Erik D. Herzog et al.   Cold Spring Harbor Perspectives in Biology

Reciprocal interactions between circadian clocks and aging

(2016) Gareth Banks et al.   MAMMALIAN GENOME

GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person

(2016) Youna Hu et al.   Nature Communications

Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank

(2016) Jacqueline M. Lane et al.   Nature Communications

Gene expression defines natural changes in mammalian lifespan

(2015) Alexey A. Fushan et al.   AGING CELL

The Regulatory Factor ZFHX3 Modifies Circadian Function in SCN via an AT Motif-Driven Axis

(2015) Michael J. Parsons et al.   CELL

Ube3a Imprinting Impairs Circadian Robustness in Angelman Syndrome Models

(2015) Shu-qun Shi et al.   CURRENT BIOLOGY

Ins and outs of GPCR signaling in primary cilia

(2015) K. B. Schou et al.   EMBO REPORTS

Maternal Ube3a Loss Disrupts Sleep Homeostasis But Leaves Circadian Rhythmicity Largely Intact

(2015) J. Christopher Ehlen et al.   JOURNAL OF NEUROSCIENCE

Vasoactive Intestinal Polypeptide (VIP)-Expressing Neurons in the Suprachiasmatic Nucleus Provide Sparse GABAergic Outputs to Local Neurons with Circadian Regulation Occurring Distal to the Opening of Postsynaptic GABAA Ionotropic Receptors

(2015) J. Fan et al.   JOURNAL OF NEUROSCIENCE

Cellular Clocks in AVP Neurons of the SCN Are Critical for Interneuronal Coupling Regulating Circadian Behavior Rhythm

(2015) Michihiro Mieda et al.   NEURON

GABA-mediated repulsive coupling between circadian clock neurons in the SCN encodes seasonal time

(2015) Jihwan Myung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distinct roles for GABA across multiple timescales in mammalian circadian timekeeping

(2015) Daniel DeWoskin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Noncanonical Genomic Imprinting Effects in Offspring

(2015) Paul J. Bonthuis et al.   Cell Reports

Circadian behavior is light-reprogrammed by plastic DNA methylation

(2014) Abdelhalim Azzi et al.   NATURE NEUROSCIENCE

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Functionally Enigmatic Genes: A Case Study of the Brain Ignorome

(2014) Ashutosh K. Pandey et al.   PLoS One

Competing E3 Ubiquitin Ligases Govern Circadian Periodicity by Degradation of CRY in Nucleus and Cytoplasm

(2013) Seung-Hee Yoo et al.   CELL

The CRTC1-SIK1 Pathway Regulates Entrainment of the Circadian Clock

(2013) Aarti Jagannath et al.   CELL

SIRT1 Mediates Central Circadian Control in the SCN by a Mechanism that Decays with Aging

(2013) Hung-Chun Chang et al.   CELL

The C2 domains of granuphilin are high-affinity sensors for plasma membrane lipids

(2013) Tatyana A. Lyakhova et al.   CHEMISTRY AND PHYSICS OF LIPIDS

Gonadal- and Sex-Chromosome-Dependent Sex Differences in the Circadian System

(2013) Dika A. Kuljis et al.   ENDOCRINOLOGY

GABA Networks Destabilize Genetic Oscillations in the Circadian Pacemaker

(2013) G. Mark Freeman et al.   NEURON

Dynamic Interactions Mediated by Nonredundant Signaling Mechanisms Couple Circadian Clock Neurons

(2013) Jennifer A. Evans et al.   NEURON

Long-term alterations to the brain transcriptome in a maternal voluntary consumption model of fetal alcohol spectrum disorders

(2012) Morgan L. Kleiber et al.   BRAIN RESEARCH

Modular Genetic Control of Sexually Dimorphic Behaviors

(2012) Xiaohong Xu et al.   CELL

Disrupted Circadian Rhythms in a Mouse Model of Schizophrenia

(2012) Peter L. Oliver et al.   CURRENT BIOLOGY

Circadian Behaviour in Neuroglobin Deficient Mice

(2012) Christian A. Hundahl et al.   PLoS One

Loss of Gnas Imprinting Differentially Affects REM/NREM Sleep and Cognition in Mice

(2012) Glenda Lassi et al.   PLoS Genetics

Synaptotagmin10-Cre, a Driver to Disrupt Clock Genes in the SCN

(2011) Jana Husse et al.   JOURNAL OF BIOLOGICAL RHYTHMS

Development, Maturation, and Necessity of Transcription Factors in the Mouse Suprachiasmatic Nucleus

(2011) C. VanDunk et al.   JOURNAL OF NEUROSCIENCE

Sequence-based characterization of structural variation in the mouse genome

(2011) Binnaz Yalcin et al.   NATURE

Too many roads not taken

(2011) Aled M. Edwards et al.   NATURE

The evolution of gene expression levels in mammalian organs

(2011) David Brawand et al.   NATURE

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Linking neural activity and molecular oscillations in the SCN

(2011) Christopher S. Colwell   NATURE REVIEWS NEUROSCIENCE

Quantitative Expression Profile of Distinct Functional Regions in the Adult Mouse Brain

(2011) Takeya Kasukawa et al.   PLoS One

Circadian regulation of intracellular G-protein signalling mediates intercellular synchrony and rhythmicity in the suprachiasmatic nucleus

(2011) Masao Doi et al.   Nature Communications

The effects of aging vs. α7 nAChR subunit deficiency on the mouse brain transcriptome: aging beats the deficiency

(2010) Merav Kedmi et al.   AGE

Tissue-specific disallowance of housekeeping genes: The other face of cell differentiation

(2010) L. Thorrez et al.   GENOME RESEARCH

Delivery of GABAARs to Synapses Is Mediated by HAP1-KIF5 and Disrupted by Mutant Huntingtin

(2010) Alison E. Twelvetrees et al.   NEURON

AltAnalyze and DomainGraph: analyzing and visualizing exon expression data

(2010) Dorothea Emig et al.   NUCLEIC ACIDS RESEARCH

Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation

(2010) Daniele Merico et al.   PLoS One

High-Resolution Analysis of Parent-of-Origin Allelic Expression in the Mouse Brain

(2010) C. Gregg et al.   SCIENCE

A basic introduction to fixed-effect and random-effects models for meta-analysis

(2010) Michael Borenstein et al.   Research Synthesis Methods

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Proteomic Analysis Reveals the Role of Synaptic Vesicle Cycling in Sustaining the Suprachiasmatic Circadian Clock

(2009) Michael J. Deery et al.   CURRENT BIOLOGY

Deletion of the secretory vesicle proteins IA-2 and IA-2β disrupts circadian rhythms of cardiovascular and physical activity

(2009) Soo Mi Kim et al.   FASEB JOURNAL

Rab27a and Rab27b control different steps of the exosome secretion pathway

(2009) Matias Ostrowski et al.   NATURE CELL BIOLOGY

Key Issues in Conducting a Meta-Analysis of Gene Expression Microarray Datasets

(2008) Adaikalavan Ramasamy et al.   PLOS MEDICINE