Coupling of microRNA-directed phased small interfering RNA generation from long noncoding genes with alternative splicing and alternative polyadenylation in small RNA-mediated gene silencing

The Diversification of PlantNBS-LRRDefense Genes Directs the Evolution of MicroRNAs That Target Them

(2016) Yu Zhang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Alternative polyadenylation of mRNA precursors

(2016) Bin Tian et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

PMS1T, producing phased small-interfering RNAs, regulates photoperiod-sensitive male sterility in rice

(2016) Yourong Fan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

miRNA Biogenesis: A Dynamic Pathway

(2016) Natalia P. Achkar et al.   TRENDS IN PLANT SCIENCE

A dynamic evolutionary and functional landscape of plant phased small interfering RNAs

(2015) Yi Zheng et al.   BMC BIOLOGY

MicroRNAs and targets in senescent litchi fruit during ambient storage and post-cold storage shelf life

(2015) Furong Yao et al.   BMC PLANT BIOLOGY

Extensive Families of miRNAs andPHASLoci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants

(2015) Rui Xia et al.   MOLECULAR BIOLOGY AND EVOLUTION

Novel and Recently Evolved MicroRNA Clusters Regulate ExpansiveF-BOXGene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry

(2015) Rui Xia et al.   PLANT PHYSIOLOGY

Spatiotemporally dynamic, cell-type–dependent premeiotic and meiotic phasiRNAs in maize anthers

(2015) Jixian Zhai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Missing Pieces in the Puzzle of Plant MicroRNAs

(2015) Rodrigo S. Reis et al.   TRENDS IN PLANT SCIENCE

Genome-wide comparison of microRNAs and their targeted transcripts among leaf, flower and fruit of sweet orange

(2014) Yuanlong Liu et al.   BMC GENOMICS

An Atlas of Soybean Small RNAs Identifies Phased siRNAs from Hundreds of Coding Genes

(2014) Siwaret Arikit et al.   PLANT CELL

The Arabidopsis miR472-RDR6 Silencing Pathway Modulates PAMP- and Effector-Triggered Immunity through the Post-transcriptional Control of Disease Resistance Genes

(2014) Martine Boccara et al.   PLoS Pathogens

Classification and Comparison of Small RNAs from Plants

(2013) Michael J. Axtell   Annual Review of Plant Biology

Rapid construction of parallel analysis of RNA end (PARE) libraries for Illumina sequencing

(2013) Jixian Zhai et al.   METHODS

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

MicroRNA Superfamilies Descended from miR390 and Their Roles in Secondary Small Interfering RNA Biogenesis in Eudicots

(2013) Rui Xia et al.   PLANT CELL

Phased, Secondary, Small Interfering RNAs in Posttranscriptional Regulatory Networks

(2013) Q. Fei et al.   PLANT CELL

Biogenesis, Turnover, and Mode of Action of Plant MicroRNAs

(2013) K. Rogers et al.   PLANT CELL

Complexity of the Alternative Splicing Landscape in Plants

(2013) A. S. N. Reddy et al.   PLANT CELL

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs

(2012) Hong Zhu et al.   BMC PLANT BIOLOGY

Genomewide analysis of intronic microRNAs in rice and Arabidopsis

(2012) G. D. YANG et al.   JOURNAL OF GENETICS

A MicroRNA Superfamily Regulates Nucleotide Binding Site-Leucine-Rich Repeats and Other mRNAs

(2012) P. V. Shivaprasad et al.   PLANT CELL

Alternative mRNA processing increases the complexity of microRNA-based gene regulation in Arabidopsis

(2012) Xiaozeng Yang et al.   PLANT JOURNAL

Alternative splicing in plants – coming of age

(2012) Naeem H. Syed et al.   TRENDS IN PLANT SCIENCE

Apple miRNAs and tasiRNAs with novel regulatory networks

(2012) Rui Xia et al.   GENOME BIOLOGY

MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs

(2011) J. Zhai et al.   GENES & DEVELOPMENT

Mechanisms and Consequences of Alternative Polyadenylation

(2011) Dafne Campigli Di Giammartino et al.   MOLECULAR CELL

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Evolution and Functional Diversification ofMIRNAGenes

(2011) Josh T. Cuperus et al.   PLANT CELL

Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type

(2010) Qiang Xu et al.   BMC GENOMICS

Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis

(2010) Josh T Cuperus et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

22-nucleotide RNAs trigger secondary siRNA biogenesis in plants

(2010) H.-M. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Small RNAs and Their Roles in Plant Development

(2009) Xuemei Chen   Annual Review of Cell and Developmental Biology

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis

(2009) Gang Wu et al.   CELL

Origin, Biogenesis, and Activity of Plant MicroRNAs

(2009) Olivier Voinnet   CELL

Clusters and superclusters of phased small RNAs in the developing inflorescence of rice

(2009) C. Johnson et al.   GENOME RESEARCH

Crop improvement using small RNAs: applications and predictive ecological risk assessments

(2009) Carol Auer et al.   TRENDS IN BIOTECHNOLOGY

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

(2008) C. Addo-Quaye et al.   BIOINFORMATICS

Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)

(2008) C. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNAi-mediated crop protection against insects

(2008) Daniel R.G. Price et al.   TRENDS IN BIOTECHNOLOGY