PhagoSight: An Open-Source MATLAB® Package for the Analysis of Fluorescent Neutrophil and Macrophage Migration in a Zebrafish Model

Cxcl8 (IL-8) Mediates Neutrophil Recruitment and Behavior in the Zebrafish Inflammatory Response

(2013) S. de Oliveira et al.   JOURNAL OF IMMUNOLOGY

Neutrophil-Delivered Myeloperoxidase Dampens the Hydrogen Peroxide Burst after Tissue Wounding in Zebrafish

(2012) Luke Pase et al.   CURRENT BIOLOGY

Dynamic In Situ Cytometry Uncovers T Cell Receptor Signaling during Immunological Synapses and Kinapses In Vivo

(2012) Hélène D. Moreau et al.   IMMUNITY

Calibrating spatio-temporal models of leukocyte dynamics against in vivo live-imaging data using approximate Bayesian computation

(2012) Juliane Liepe et al.   Integrative Biology

Icy: an open bioimage informatics platform for extended reproducible research

(2012) Fabrice de Chaumont et al.   NATURE METHODS

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

The Neutrophil's Eye-View: Inference and Visualisation of the Chemoattractant Field Driving Cell Chemotaxis In Vivo

(2012) Visakan Kadirkamanathan et al.   PLoS One

Shape-Based Tracking Allows Functional Discrimination of Two Immune Cell Subsets Expressing the Same Fluorescent Tag in Mouse Lung Explant

(2012) Daniel Fiole et al.   PLoS One

Quantification of lymph node transit times reveals differences in antigen surveillance strategies of naive CD4+ and CD8+ T cells

(2012) J. N. Mandl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Activation of hypoxia-inducible factor-1  (Hif-1 ) delays inflammation resolution by reducing neutrophil apoptosis and reverse migration in a zebrafish inflammation model

(2011) P. M. Elks et al.   BLOOD

Vascular endothelial growth factor receptor 3 directly regulates murine neurogenesis

(2011) C.-F. Calvo et al.   GENES & DEVELOPMENT

Speed quantification and tracking of moving objects in adaptive optics scanning laser ophthalmoscopy

(2011) Johnny Tam   JOURNAL OF BIOMEDICAL OPTICS

Aquaporin 9 phosphorylation mediates membrane localization and neutrophil polarization

(2011) Thommie Karlsson et al.   JOURNAL OF LEUKOCYTE BIOLOGY

A formal mathematical framework for physiological observations, experiments and analyses

(2011) T. A. Nielsen et al.   Journal of the Royal Society Interface

Lyn is a redox sensor that mediates leukocyte wound attraction in vivo

(2011) Sa Kan Yoo et al.   NATURE

Ground-truth data cannot do it alone

(2011)   NATURE METHODS

GeneProf: analysis of high-throughput sequencing experiments

(2011) Florian Halbritter et al.   NATURE METHODS

Vertebrate neural stem cell segmentation, tracking and lineaging with validation and editing

(2011) Mark Winter et al.   Nature Protocols

Defining the quantitative limits of intravital two-photon lymphocyte tracking

(2011) J. Textor et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tracking Neutrophil Intraluminal Crawling, Transendothelial Migration and Chemotaxis in Tissue by Intravital Video Microscopy

(2011) Najia Xu et al.   Jove-Journal of Visualized Experiments

Use of bioluminescence imaging to track neutrophil migration and its inhibition in experimental colitis

(2010) C. T. Murphy et al.   CLINICAL AND EXPERIMENTAL IMMUNOLOGY

Application of intravital microscopy in studies of tumor microcirculation

(2010) Sarah Jane Lunt et al.   JOURNAL OF BIOMEDICAL OPTICS

In vivo two-photon imaging reveals monocyte-dependent neutrophil extravasation during pulmonary inflammation

(2010) D. Kreisel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Blood Vessel Maturation and Response to Vascular-Disrupting Therapy in Single Vascular Endothelial Growth Factor-A Isoform-Producing Tumors

(2008) G. M. Tozer et al.   CANCER RESEARCH

Muscle degeneration and leukocyte infiltration caused by mutation of zebrafish fad24

(2008) Kevin B. Walters et al.   DEVELOPMENTAL DYNAMICS

Measuring the velocity of fluorescently labelled red blood cells with a keyhole tracking algorithm

(2008) C. C. REYES-ALDASORO et al.   JOURNAL OF MICROSCOPY

Real-time multi-parameter spectroscopy and localization in three-dimensional single-particle tracking

(2008) C. Hellriegel et al.   Journal of the Royal Society Interface

Estimation of Apparent Tumor Vascular Permeability from Multiphoton Fluorescence Microscopic Images of P22 Rat Sarcomas In Vivo

(2008) Constantino Carlos Reyes-Aldasoro et al.   MICROCIRCULATION

T cell sensing of antigen dose governs interactive behavior with dendritic cells and sets a threshold for T cell activation

(2008) Sarah E Henrickson et al.   NATURE IMMUNOLOGY