Total RNA-seq to identify pharmacological effects on specific stages of mRNA synthesis
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Total RNA-seq to identify pharmacological effects on specific stages of mRNA synthesis
Authors
Keywords
-
Journal
Nature Chemical Biology
Volume 13, Issue 5, Pages 501-507
Publisher
Springer Nature
Online
2017-03-07
DOI
10.1038/nchembio.2317
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- P-TEFb regulation of transcription termination factor Xrn2 revealed by a chemical genetic screen for Cdk9 substrates
- (2016) Miriam Sansó et al. GENES & DEVELOPMENT
- Genome-wide profiling of RNA polymerase transcription at nucleotide resolution in human cells with native elongating transcript sequencing
- (2016) Andreas Mayer et al. Nature Protocols
- TT-seq maps the human transient transcriptome
- (2016) Björn Schwalb et al. SCIENCE
- Native Elongating Transcript Sequencing Reveals Human Transcriptional Activity at Nucleotide Resolution
- (2015) Andreas Mayer et al. CELL
- Effects of Transcription Elongation Rate and Xrn2 Exonuclease Activity on RNA Polymerase II Termination Suggest Widespread Kinetic Competition
- (2015) Nova Fong et al. MOLECULAR CELL
- Analysis of intronic and exonic reads in RNA-seq data characterizes transcriptional and post-transcriptional regulation
- (2015) Dimos Gaidatzis et al. NATURE BIOTECHNOLOGY
- Simultaneous generation of many RNA-seq libraries in a single reaction
- (2015) Alexander A Shishkin et al. NATURE METHODS
- Getting up to speed with transcription elongation by RNA polymerase II
- (2015) Iris Jonkers et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Human Telomerase RNA Processing and Quality Control
- (2015) Chi-Kang Tseng et al. Cell Reports
- Identification of Small Molecule Inhibitors of Pre-mRNA Splicing
- (2014) Andrea Pawellek et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- SnapShot-Seq: A Method for Extracting Genome-Wide, In Vivo mRNA Dynamics from a Single Total RNA Sample
- (2014) Jesse M. Gray et al. PLoS One
- The structure and substrate specificity of human Cdk12/Cyclin K
- (2014) Christian A. Bösken et al. Nature Communications
- Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons
- (2014) Iris Jonkers et al. eLife
- Control of Transcriptional Elongation
- (2013) Hojoong Kwak et al. Annual Review of Genetics
- SR Proteins Collaborate with 7SK and Promoter-Associated Nascent RNA to Release Paused Polymerase
- (2013) Xiong Ji et al. CELL
- The RNA Polymerase II Carboxy-Terminal Domain (CTD) Code
- (2013) Dirk Eick et al. CHEMICAL REVIEWS
- Promoter directionality is controlled by U1 snRNP and polyadenylation signals
- (2013) Albert E. Almada et al. NATURE
- Polyadenylation site–induced decay of upstream transcripts enforces promoter directionality
- (2013) Evgenia Ntini et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Genome-Wide Transcriptional Effects of the Anti-Cancer Agent Camptothecin
- (2013) Artur Veloso et al. PLoS One
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Comparison of Splicing Factor 3b Inhibitors in Human Cells
- (2012) Yang Gao et al. CHEMBIOCHEM
- Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans
- (2012) Karen Adelman et al. NATURE REVIEWS GENETICS
- Nascent-seq indicates widespread cotranscriptional pre-mRNA splicing in Drosophila
- (2011) Y. L. Khodor et al. GENES & DEVELOPMENT
- Nascent transcript sequencing visualizes transcription at nucleotide resolution
- (2011) L. Stirling Churchman et al. NATURE
- Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells
- (2011) Michal Rabani et al. NATURE BIOTECHNOLOGY
- c-Myc Regulates Transcriptional Pause Release
- (2010) Peter B. Rahl et al. CELL
- The differential interaction of snRNPs with pre-mRNA reveals splicing kinetics in living cells
- (2010) Martina Huranová et al. JOURNAL OF CELL BIOLOGY
- Rapid-Response Splicing Reporter Screens Identify Differential Regulators of Constitutive and Alternative Splicing
- (2010) I. Younis et al. MOLECULAR AND CELLULAR BIOLOGY
- U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylation
- (2010) Daisuke Kaida et al. NATURE
- Pre-mRNA Processing Reaches Back toTranscription and Ahead to Translation
- (2009) Melissa J. Moore et al. CELL
- CDK9 directs H2B monoubiquitination and controls replication-dependent histone mRNA 3′-end processing
- (2009) Judith Pirngruber et al. EMBO REPORTS
- Meayamycin inhibits pre-messenger RNA splicing and exhibits picomolar activity against multidrug-resistant cells
- (2009) B. J. Albert et al. MOLECULAR CANCER THERAPEUTICS
- Rates of in situ transcription and splicing in large human genes
- (2009) Jarnail Singh et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Transcriptome analysis by strand-specific sequencing of complementary DNA
- (2009) Dmitri Parkhomchuk et al. NUCLEIC ACIDS RESEARCH
- The Biflavonoid Isoginkgetin Is a General Inhibitor of Pre-mRNA Splicing
- (2008) Kristine O'Brien et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Short-circuiting RNA splicing
- (2008) Matthew D Disney Nature Chemical Biology
- GroEL stimulates protein folding through forced unfolding
- (2008) Zong Lin et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- A high-throughput screening strategy identifies cardiotonic steroids as alternative splicing modulators
- (2008) P. Stoilov et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- RNA Exosome Depletion Reveals Transcription Upstream of Active Human Promoters
- (2008) Pascal Preker et al. SCIENCE
- Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
- (2008) Leighton J. Core et al. SCIENCE
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started