Single-molecule FRET reveals the energy landscape of the full-length SAM-I riboswitch

Reversible Reconfiguration of DNA Origami Nanochambers Monitored by Single-Molecule FRET

(2015) Barbara Saccà et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Multiple conformational states of riboswitches fine-tune gene regulation

(2015) Boris Fürtig et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Mg2+ Shifts Ligand-Mediated Folding of a Riboswitch from Induced-Fit to Conformational Selection

(2015) Krishna C. Suddala et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Linking aptamer-ligand binding and expression platform folding in riboswitches: prospects for mechanistic modeling and design

(2015) Fareed Aboul-ela et al.   Wiley Interdisciplinary Reviews-RNA

Hierarchy of RNA Functional Dynamics

(2014) Anthony M. Mustoe et al.   Annual Review of Biochemistry

Complex RNA Folding Kinetics Revealed by Single-Molecule FRET and Hidden Markov Models

(2014) Bettina G. Keller et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Fast single-molecule FRET spectroscopy: theory and experiment

(2014) Hoi Sung Chung et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Structural basis for diversity in the SAM clan of riboswitches

(2014) J. J. Trausch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Three-state mechanism couples ligand and temperature sensing in riboswitches

(2013) Anke Reining et al.   NATURE

The Impact of a Ligand Binding on Strand Migration in the SAM-I Riboswitch

(2013) Wei Huang et al.   PLoS Computational Biology

Conformational Heterogeneity of the SAM-I Riboswitch Transcriptional ON State: A Chaperone-Like Role for S-Adenosyl Methionine

(2012) Wei Huang et al.   JOURNAL OF MOLECULAR BIOLOGY

The expression platform and the aptamer: cooperativity between Mg2+ and ligand in the SAM-I riboswitch

(2012) Scott P. Hennelly et al.   NUCLEIC ACIDS RESEARCH

Basis for ligand discrimination between ON and OFF state riboswitch conformations: The case of the SAM-I riboswitch

(2012) V. K. Boyapati et al.   RNA

Direct Observation of Cotranscriptional Folding in an Adenine Riboswitch

(2012) K. L. Frieda et al.   SCIENCE

Single-Molecule FRET Studies of Counterion Effects on the Free Energy Landscape of Human Mitochondrial Lysine tRNA

(2011) Kirsten Dammertz et al.   BIOCHEMISTRY

Markov models of molecular kinetics: Generation and validation

(2011) Jan-Hendrik Prinz et al.   JOURNAL OF CHEMICAL PHYSICS

Prospects for Riboswitch Discovery and Analysis

(2011) Ronald R. Breaker   MOLECULAR CELL

Molecular insights into the ligand-controlled organization of the SAM-I riboswitch

(2011) Benoit Heppell et al.   Nature Chemical Biology

Single-molecule force spectroscopy of the add adenine riboswitch relates folding to regulatory mechanism

(2011) Krishna Neupane et al.   NUCLEIC ACIDS RESEARCH

Single-molecule fluorescence spectroscopy maps the folding landscape of a large protein

(2011) Menahem Pirchi et al.   Nature Communications

Evidence of a Folding Intermediate in RNase H from Single-Molecule FRET Experiments

(2010) Robert Rieger et al.   CHEMPHYSCHEM

SAM Recognition and Conformational Switching Mechanism in the Bacillus subtilis yitJ S Box/SAM-I Riboswitch

(2010) Changrui Lu et al.   JOURNAL OF MOLECULAR BIOLOGY

Tertiary contacts control switching of the SAM-I riboswitch

(2010) Scott P. Hennelly et al.   NUCLEIC ACIDS RESEARCH

Folding of a transcriptionally acting PreQ1 riboswitch

(2010) U. Rieder et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Riboswitch function: Flipping the switch or tuning the dimmer?

(2010) Nathan J. Baird et al.   RNA Biology

Free State Conformational Sampling of the SAM-I Riboswitch Aptamer Domain

(2010) Colby D. Stoddard et al.   STRUCTURE

Nonlocal Helix Formation Is Key to Understanding S-Adenosylmethionine-1 Riboswitch Function

(2009) Paul C. Whitford et al.   BIOPHYSICAL JOURNAL

Mitigating Unwanted Photophysical Processes for Improved Single-Molecule Fluorescence Imaging

(2009) Richa Dave et al.   BIOPHYSICAL JOURNAL

Discrimination between Closely Related Cellular Metabolites by the SAM-I Riboswitch

(2009) Rebecca K. Montange et al.   JOURNAL OF MOLECULAR BIOLOGY

Extracting Kinetics Information from Single-Molecule Fluorescence Resonance Energy Transfer Data Using Hidden Markov Models

(2009) Tae-Hee Lee   JOURNAL OF PHYSICAL CHEMISTRY B

A mechanism for S-adenosyl methionine assisted formation of a riboswitch conformation: a small molecule with a strong arm

(2009) Wei Huang et al.   NUCLEIC ACIDS RESEARCH

Sculpting an RNA Conformational Energy Landscape by a Methyl Group Modification—A Single-Molecule FRET Study

(2008) Andrei Yu. Kobitski et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Riboswitches: Emerging Themes in RNA Structure and Function

(2008) Rebecca K. Montange et al.   Annual Review of Biophysics

Folding of the SAM Aptamer is Determined by the Formation of a K-turn-dependent Pseudoknot†

(2008) Benoit Heppell et al.   BIOCHEMISTRY

Riboswitches that sense S-adenosylmethionine and S-adenosylhomocysteineThis paper is one of a selection of papers published in this Special Issue, entitled CSBMCB — Systems and Chemical Biology, and has undergone the Journal's usual peer review process.

(2008) Joy Xin Wang et al.   Biochemistry and Cell Biology

Direct Observation of Hierarchical Folding in Single Riboswitch Aptamers

(2008) W. J. Greenleaf et al.   SCIENCE

An Oxygen Scavenging System for Improvement of Dye Stability in Single-Molecule Fluorescence Experiments

(2007) Colin Echeverría Aitken et al.   BIOPHYSICAL JOURNAL