Mechanism of α-synuclein translocation through a VDAC nanopore revealed by energy landscape modeling of escape time distributions

On 'three decades of nanopore sequencing'

(2016) John J Kasianowicz et al.   NATURE BIOTECHNOLOGY

Three decades of nanopore sequencing

(2016) David Deamer et al.   NATURE BIOTECHNOLOGY

α-Synuclein Shows High Affinity Interaction with Voltage-dependent Anion Channel, Suggesting Mechanisms of Mitochondrial Regulation and Toxicity in Parkinson Disease

(2015) Tatiana K. Rostovtseva et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Pressure–Voltage Trap for DNA near a Solid-State Nanopore

(2014) David P. Hoogerheide et al.   ACS Nano

VDAC electronics: 2. A new, anaerobic mechanism of generation of the membrane potentials in mitochondria

(2014) Victor V. Lemeshko   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Alpha-Synuclein Lipid-Dependent Membrane Binding and Translocation through the α-Hemolysin Channel

(2014) Philip A. Gurnev et al.   BIOPHYSICAL JOURNAL

XSEDE: Accelerating Scientific Discovery

(2014) John Towns et al.   COMPUTING IN SCIENCE & ENGINEERING

Acidification Asymmetrically Affects Voltage-dependent Anion Channel Implicating the Involvement of Salt Bridges

(2014) Oscar Teijido et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

α-Synuclein-Induced Membrane Remodeling Is Driven by Binding Affinity, Partition Depth, and Interleaflet Order Asymmetry

(2014) Anthony R. Braun et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Escape of DNA from a Weakly Biased Thin Nanopore: Experimental Evidence for a Universal Diffusive Behavior

(2013) David P. Hoogerheide et al.   PHYSICAL REVIEW LETTERS

Molecule-hugging graphene nanopores

(2013) S. Garaj et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effective driving force applied on DNA inside a solid-state nanopore

(2012) Bo Lu et al.   PHYSICAL REVIEW E

Biophysics of α-synuclein membrane interactions

(2011) Candace M. Pfefferkorn et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Origins and Consequences of Velocity Fluctuations during DNA Passage through a Nanopore

(2011) Bo Lu et al.   BIOPHYSICAL JOURNAL

Accelerating Markov Chain Monte Carlo Simulation by Differential Evolution with Self-Adaptive Randomized Subspace Sampling

(2011) J. A. Vrugt et al.   INTERNATIONAL JOURNAL OF NONLINEAR SCIENCES AND NUMERICAL SIMULATION

Theory of capture rate in polymer translocation

(2010) M. Muthukumar   JOURNAL OF CHEMICAL PHYSICS

Monitoring the Escape of DNA from a Nanopore Using an Alternating Current Signal

(2010) Daniel K. Lathrop et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Nanopore DNA sequencing with MspA

(2010) I. M. Derrington et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

FiPy: Partial Differential Equations with Python

(2009) Jonathan E. Guyer et al.   COMPUTING IN SCIENCE & ENGINEERING

Origin of translocation barriers for polyelectrolyte chains

(2009) Rajeev Kumar et al.   JOURNAL OF CHEMICAL PHYSICS

Electrostatic focusing of unlabelled DNA into nanoscale pores using a salt gradient

(2009) Meni Wanunu et al.   Nature Nanotechnology

Continuous base identification for single-molecule nanopore DNA sequencing

(2009) James Clarke et al.   Nature Nanotechnology

Origin of the electrophoretic force on DNA in solid-state nanopores

(2009) Stijn van Dorp et al.   Nature Physics

Mitochondrial Import and Accumulation of α-Synuclein Impair Complex I in Human Dopaminergic Neuronal Cultures and Parkinson Disease Brain

(2008) Latha Devi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The potential and challenges of nanopore sequencing

(2008) Daniel Branton et al.   NATURE BIOTECHNOLOGY

The crystal structure of mouse VDAC1 at 2.3 A resolution reveals mechanistic insights into metabolite gating

(2008) R. Ujwal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA