Fungal and Bacterial Diversity of Airway Microbiota in Adults with Cystic Fibrosis: Concordance Between Conventional Methods and Ultra-Deep Sequencing, and Their Practical use in the Clinical Laboratory

Contribution of Ultra Deep Sequencing in the Clinical Diagnosis of a New Fungal Pathogen Species: Basidiobolus meristosporus

(2017) Emilie Sitterlé et al.   Frontiers in Microbiology

Evaluating the Impact of DNA Extraction Method on the Representation of Human Oral Bacterial and Fungal Communities

(2017) Anna Vesty et al.   PLoS One

The Microbiome in Cystic Fibrosis

(2016) Yvonne J. Huang et al.   CLINICS IN CHEST MEDICINE

The role of anaerobic bacteria in the cystic fibrosis airway

(2016) Laura J. Sherrard et al.   CURRENT OPINION IN PULMONARY MEDICINE

Sequence-based methods for detecting and evaluating the human gut mycobiome

(2016) M.J. Suhr et al.   LETTERS IN APPLIED MICROBIOLOGY

An overview of international literature from cystic fibrosis registries. Part 5: Update 2012-2015 on lung disease

(2016) Donatello Salvatore et al.   PEDIATRIC PULMONOLOGY

Cohort Study of Airway Mycobiome in Adult Cystic Fibrosis Patients: Differences in Community Structure between Fungi and Bacteria Reveal Predominance of Transient Fungal Elements

(2015) Rolf Kramer et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Culture-Based and Culture-Independent Bacteriologic Analysis of Cystic Fibrosis Respiratory Specimens

(2015) Mona A. Mahboubi et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Emerging bacterial pathogens and changing concepts of bacterial pathogenesis in cystic fibrosis

(2015) Michael D. Parkins et al.   Journal of Cystic Fibrosis

Lung microbiota across age and disease stage in cystic fibrosis

(2015) Bryan Coburn et al.   Scientific Reports

Characterization and quantification of the fungal microbiome in serial samples from individuals with cystic fibrosis

(2014) Sven D Willger et al.   Microbiome

Analysis of the Airway Microbiota of Healthy Individuals and Patients with Chronic Obstructive Pulmonary Disease by T-RFLP and Clone Sequencing

(2013) Tetyana Zakharkina et al.   PLoS One

The emerging world of the fungal microbiome

(2013) Gary B. Huffnagle et al.   TRENDS IN MICROBIOLOGY

Microbial culturomics: paradigm shift in the human gut microbiome study

(2012) J.-C. Lagier et al.   CLINICAL MICROBIOLOGY AND INFECTION

Impact of antibiotic treatment for pulmonary exacerbations on bacterial diversity in cystic fibrosis

(2012) T.W.V. Daniels et al.   Journal of Cystic Fibrosis

Next-Generation Sequencing in the Analysis of Human Microbiota

(2012) Geraint B. Rogers et al.   Molecular Diagnosis & Therapy

The Airway Microbiota in Cystic Fibrosis: A Complex Fungal and Bacterial Community—Implications for Therapeutic Management

(2012) Laurence Delhaes et al.   PLoS One

Quantitative Analysis of the Human Airway Microbial Ecology Reveals a Pervasive Signature for Cystic Fibrosis

(2012) P. C. Blainey et al.   Science Translational Medicine

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

The Changing Microbial Epidemiology in Cystic Fibrosis

(2010) J. J. LiPuma   CLINICAL MICROBIOLOGY REVIEWS

Phylogenetic and metabolic diversity of bacteria associated with cystic fibrosis

(2010) Adam M Guss et al.   ISME Journal

Partitioning core and satellite taxa from within cystic fibrosis lung bacterial communities

(2010) Christopher J van der Gast et al.   ISME Journal

Prevalence and risk factors for recovery of filamentous fungi in individuals with cystic fibrosis

(2010) Christopher R. Sudfeld et al.   Journal of Cystic Fibrosis

Lack of standardization in the procedures for mycological examination of sputum samples from CF patients: a possible cause for variations in the prevalence of filamentous fungi

(2010) Andrew M. Borman et al.   MEDICAL MYCOLOGY

Microbial diversity in the sputum of a cystic fibrosis patient studied with 16S rDNA pyrosequencing

(2009) F. Armougom et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Determining Cystic Fibrosis-Affected Lung Microbiology: Comparison of Spontaneous and Serially Induced Sputum Samples by Use of Terminal Restriction Fragment Length Polymorphism Profiling

(2009) Geraint B. Rogers et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Detection of Anaerobic Bacteria in High Numbers in Sputum from Patients with Cystic Fibrosis

(2008) Michael M. Tunney et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE