The Airway Microbiota in Cystic Fibrosis: A Complex Fungal and Bacterial Community—Implications for Therapeutic Management

Colonization by Candida in children with cancer, children with cystic fibrosis, and healthy controls

(2011) K.W. Gammelsrud et al.   CLINICAL MICROBIOLOGY AND INFECTION

Clinical Significance of Microbial Infection and Adaptation in Cystic Fibrosis

(2011) A. R. Hauser et al.   CLINICAL MICROBIOLOGY REVIEWS

The airway microbiome in cystic fibrosis and implications for treatment

(2011) Edith T Zemanick et al.   CURRENT OPINION IN PEDIATRICS

Exploring and quantifying fungal diversity in freshwater lake ecosystems using rDNA cloning/sequencing and SSU tag pyrosequencing

(2011) Sébastien Monchy et al.   ENVIRONMENTAL MICROBIOLOGY

The Quorum-Sensing Molecules Farnesol/Homoserine Lactone and Dodecanol Operate via Distinct Modes of Action in Candida albicans

(2011) Rebecca A. Hall et al.   EUKARYOTIC CELL

A prospective survey of Aspergillus spp. in respiratory tract samples: prevalence, clinical impact and antifungal susceptibility

(2011) K. L. Mortensen et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

The Pseudomonas quinolone signal (PQS), and its precursor HHQ, modulate interspecies and interkingdom behaviour

(2011) F. Jerry Reen et al.   FEMS MICROBIOLOGY ECOLOGY

Effect of Aspergillus fumigatus and Candida albicans on pro-inflammatory response in cystic fibrosis epithelium

(2011) James A. Reihill et al.   Journal of Cystic Fibrosis

Emerging opportunistic yeast infections

(2011) Marisa H Miceli et al.   LANCET INFECTIOUS DISEASES

Analysis of the Lung Microbiome in the “Healthy” Smoker and in COPD

(2011) John R. Erb-Downward et al.   PLoS One

An Alignment-Free Approach for Eukaryotic ITS2 Annotation and Phylogenetic Inference

(2011) Guillermin Agüero-Chapin et al.   PLoS One

A morphological and phylogenetic revision of the Nectria cinnabarina species complex

(2011) Y. Hirooka et al.   STUDIES IN MYCOLOGY

Intestinal microbiota in inflammatory bowel disease: Friend of foe?

(2011) Francesca Fava   WORLD JOURNAL OF GASTROENTEROLOGY

Efficacy of the Combination of Tobramycin and a Macrolide in an In Vitro Pseudomonas aeruginosa Mature Biofilm Model

(2010) M. Tre-Hardy et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Pseudomonas aeruginosa inhibits in-vitro Candida biofilm development.

(2010) H.m.h.n. Bandara et al.   BMC MICROBIOLOGY

Sputum Candida albicans Presages FEV 1 Decline and Hospital-Treated Exacerbations in Cystic Fibrosis

(2010) Sanjay H. Chotirmall et al.   CHEST

Relationship between cystic fibrosis respiratory tract bacterial communities and age, genotype, antibiotics and Pseudomonas aeruginosa

(2010) Vanja Klepac-Ceraj et al.   ENVIRONMENTAL MICROBIOLOGY

Pseudomonas aeruginosa and their small diffusible extracellular molecules inhibit Aspergillus fumigatus biofilm formation

(2010) Eilidh Mowat et al.   FEMS MICROBIOLOGY LETTERS

Pneumocystis: from a doubtful unique entity to a group of highly diversified fungal species

(2010) Magali Chabé et al.   FEMS YEAST RESEARCH

Molecular ecology and polyphasic characterization of the microbiota associated with semi-dry processed coffee (Coffea arabica L.)

(2010) Danielle Marques Vilela et al.   FOOD MICROBIOLOGY

Endotracheal tube biofilm inoculation of oral flora and subsequent colonization of opportunistic pathogens

(2010) Sarah D. Perkins et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Phylogenetic and metabolic diversity of bacteria associated with cystic fibrosis

(2010) Adam M Guss et al.   ISME Journal

Partitioning core and satellite taxa from within cystic fibrosis lung bacterial communities

(2010) Christopher J van der Gast et al.   ISME Journal

Prevalence and risk factors for recovery of filamentous fungi in individuals with cystic fibrosis

(2010) Christopher R. Sudfeld et al.   Journal of Cystic Fibrosis

Metagenomic analysis of bronchoalveolar lavage samples from patients with idiopathic interstitial pneumonia and its antagonic relation with Pneumocystis jirovecii colonization

(2010) Vicente Friaza et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Comparison of techniques to examine the diversity of fungi in adult patients with cystic fibrosis

(2010) Yuriko Nagano et al.   MEDICAL MYCOLOGY

Lack of standardization in the procedures for mycological examination of sputum samples from CF patients: a possible cause for variations in the prevalence of filamentous fungi

(2010) Andrew M. Borman et al.   MEDICAL MYCOLOGY

Persistence ofCandidaspecies in the respiratory tract of cystic fibrosis patients

(2010) Michaela Muthig et al.   MEDICAL MYCOLOGY

Fungal respiratory infections in cystic fibrosis: a growing problem

(2010) Regine Horré et al.   MEDICAL MYCOLOGY

Mixed bacterial-fungal infections in the CF respiratory tract

(2010) Laurie Whittaker Leclair et al.   MEDICAL MYCOLOGY

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Quorum Sensing and Virulence of Pseudomonas aeruginosa during Lung Infection of Cystic Fibrosis Patients

(2010) Thomas Bjarnsholt et al.   PLoS One

Assessment of Bias Associated with Incomplete Extraction of Microbial DNA from Soil

(2009) L. M. Feinstein et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evaluation of the bacterial diversity among and within individual venous leg ulcers using bacterial tag-encoded FLX and Titanium amplicon pyrosequencing and metagenomic approaches

(2009) Randall D Wolcott et al.   BMC MICROBIOLOGY

The Effect of Chronic Infection With Aspergillus fumigatus on Lung Function and Hospitalization in Patients With Cystic Fibrosis

(2009) Reshma Amin et al.   CHEST

Molecular identification and susceptibility profile in vitro of the emerging pathogen Candida kefyr

(2009) Alicia Gomez-Lopez et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Microbial diversity in the sputum of a cystic fibrosis patient studied with 16S rDNA pyrosequencing

(2009) F. Armougom et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Characterization of biofilms formed by Candida parapsilosis, C. metapsilosis, and C. orthopsilosis

(2009) Ali Abdul Lattif et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Characterization of Streptococcus milleri Group Isolates from Expectorated Sputum of Adult Patients with Cystic Fibrosis

(2009) M. E. Grinwis et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Determining Cystic Fibrosis-Affected Lung Microbiology: Comparison of Spontaneous and Serially Induced Sputum Samples by Use of Terminal Restriction Fragment Length Polymorphism Profiling

(2009) Geraint B. Rogers et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Comparisons of Subgingival Microbial Profiles of Refractory Periodontitis, Severe Periodontitis, and Periodontal Health Using the Human Oral Microbe Identification Microarray

(2009) Ana Paula V. Colombo et al.   JOURNAL OF PERIODONTOLOGY

Occurrence and relevance of filamentous fungi in respiratory secretions of patients with cystic fibrosis – a review

(2009) Marc Pihet et al.   MEDICAL MYCOLOGY

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies

(2009) Yong Wang et al.   PLoS One

Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals

(2009) Dana Willner et al.   PLoS One

Topographical and Temporal Diversity of the Human Skin Microbiome

(2009) E. A. Grice et al.   SCIENCE

Detection of Anaerobic Bacteria in High Numbers in Sputum from Patients with Cystic Fibrosis

(2008) Michael M. Tunney et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Aspergillus fumigatus Forms Biofilms with Reduced Antifungal Drug Susceptibility on Bronchial Epithelial Cells

(2008) M. J. Seidler et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

High-resolution genotyping of Aspergillus fumigatus isolates recovered from chronically colonised patients with cystic fibrosis

(2008) L. M. E. Vanhee et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Diagnosis of invasive aspergillosis using bronchoalveolar lavage in haematology patients: influence of bronchoalveolar lavage human DNA content on real-time PCR performance

(2008) E. Fréalle et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Geographic Distribution and Antifungal Susceptibility of the Newly Described Species Candida orthopsilosis and Candida metapsilosis in Comparison to the Closely Related Species Candida parapsilosis

(2008) S. R. Lockhart et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Development of an Oligonucleotide Array for Direct Detection of Fungi in Sputum Samples from Patients with Cystic Fibrosis

(2008) J.-P. Bouchara et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Development of selective media for the isolation of yeasts and filamentous fungi from the sputum of adult patients with cystic fibrosis (CF)

(2008) Yuriko Nagano et al.   Journal of Cystic Fibrosis

Signal-mediated interactions between Pseudomonas aeruginosa and Candida albicans

(2008) G. McAlester et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Phylogenetic analysis of Aspergillus species using DNA sequences from four loci

(2008) S. W. Peterson   MYCOLOGIA

Database resources of the National Center for Biotechnology Information

(2008) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH

Molecular Detection of Multiple Emerging Pathogens in Sputa from Cystic Fibrosis Patients

(2008) Fadi Bittar et al.   PLoS One

A polymicrobial perspective of pulmonary infections exposes an enigmatic pathogen in cystic fibrosis patients

(2008) C. D. Sibley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The role of microbiota in infectious disease

(2008) Bärbel Stecher et al.   TRENDS IN MICROBIOLOGY

Discerning the Complexity of Community Interactions Using a Drosophila Model of Polymicrobial Infections

(2008) Christopher D. Sibley et al.   PLoS Pathogens

Occupational Immunoglobulin E-Mediated Asthma due to Penicillium camemberti in a Dry-Sausage Packer

(2006) R. Merget et al.   RESPIRATION