Transcriptome analysis of root-knot nematode (Meloidogyne incognita )-infected tomato (Solanum lycopersicum ) roots reveals complex gene expression profiles and metabolic networks of both host and nematode during susceptible and resistance responses

Gall-forming root-knot nematodes hijack key plant cellular functions to induce multinucleate and hypertrophied feeding cells

(2016) Bruno Favery et al.   JOURNAL OF INSECT PHYSIOLOGY

RNAi-induced silencing of an effector confers transcriptional oscillation in another group of effectors in the root-knot nematode, Meloidogyne incognita

(2016) Tagginahalli N. Shivakumara et al.   NEMATOLOGY

Msp40 effector of root-knot nematode manipulates plant immunity to facilitate parasitism

(2016) Junhai Niu et al.   Scientific Reports

A Novel Meloidogyne incognita Effector Misp12 Suppresses Plant Defense Response at Latter Stages of Nematode Parasitism

(2016) Jialian Xie et al.   Frontiers in Plant Science

Meloidogyne javanica fatty acid- and retinol-binding protein (Mj-FAR-1) regulates expression of lipid-, cell wall-, stress- and phenylpropanoid-related genes during nematode infection of tomato

(2015) Ionit Iberkleid et al.   BMC GENOMICS

PANTHER version 10: expanded protein families and functions, and analysis tools

(2015) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Transcriptome Analysis of Resistant and Susceptible Alfalfa Cultivars Infected With Root-Knot Nematode Meloidogyne incognita

(2015) Olga A. Postnikova et al.   PLoS One

Conserved nematode signalling molecules elicit plant defenses and pathogen resistance

(2015) Patricia Manosalva et al.   Nature Communications

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Mining Novel Effector Proteins from the Esophageal Gland Cells of Meloidogyne incognita

(2014) William B. Rutter et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A role forLATERAL ORGAN BOUNDARIES-DOMAIN 16during the interaction Arabidopsis-Meloidogynespp. provides a molecular link between lateral root and root-knot nematode feeding site development

(2014) Javier Cabrera et al.   NEW PHYTOLOGIST

Solanum torvum responses to the root-knot nematode Meloidogyne incognita

(2013) Paolo Bagnaresi et al.   BMC GENOMICS

Transcription profile of soybean-root-knot nematode interaction reveals a key role of phythormones in the resistance reaction

(2013) Magda Beneventi et al.   BMC GENOMICS

Transcriptional analysis through RNA sequencing of giant cells induced by Meloidogyne graminicola in rice roots

(2013) Hongli Ji et al.   JOURNAL OF EXPERIMENTAL BOTANY

Expression of tomato salicylic acid (SA)-responsive pathogenesis-related genes inMi-1-mediated and SA-induced resistance to root-knot nematodes

(2013) Sergio Molinari et al.   MOLECULAR PLANT PATHOLOGY

Distinct and conserved transcriptomic changes during nematode-induced giant cell development in tomato compared with Arabidopsis: a functional role for gene repression

(2013) Mary Portillo et al.   NEW PHYTOLOGIST

Nematode effector proteins: an emerging paradigm of parasitism

(2013) Melissa G. Mitchum et al.   NEW PHYTOLOGIST

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

(2013) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

The 8D05 Parasitism Gene of Meloidogyne incognita Is Required for Successful Infection of Host Roots

(2013) Bingye Xue et al.   PHYTOPATHOLOGY

Mi-1-Mediated Resistance to Meloidogyne incognita in Tomato May Not Rely on Ethylene but Hormone Perception through ETR3 Participates in Limiting Nematode Infection in a Susceptible Host

(2013) Sophie Mantelin et al.   PLoS One

Utility of Host Delivered RNAi of Two FMRF Amide Like Peptides, flp-14 and flp-18, for the Management of Root Knot Nematode, Meloidogyne incognita

(2013) Pradeep Kumar Papolu et al.   PLoS One

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

CLE and RGF Family Peptide Hormone Signaling in Plant Development

(2012) Colin D Leasure et al.   Molecular Plant

Identification of candidate effector genes in the transcriptome of the rice root knot nematodeMeloidogyne graminicola

(2012) Annelies Haegeman et al.   MOLECULAR PLANT PATHOLOGY

A Novel Effector Protein, MJ-NULG1a, Targeted to Giant Cell Nuclei Plays a Role in Meloidogyne javanica Parasitism

(2012) Borong Lin et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The Root-Knot Nematode Calreticulin Mi-CRT Is a Key Effector in Plant Defense Suppression

(2012) M. Jaouannet et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

Transcriptional reprogramming by root knot and migratory nematode infection in rice

(2012) Tina Kyndt et al.   NEW PHYTOLOGIST

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Analysis of Gene expression in soybean (Glycine max) roots in response to the root knot nematode Meloidogyne incognita using microarrays and KEGG pathways

(2011) Heba MM Ibrahim et al.   BMC GENOMICS

Functional roles of effectors of plant-parasitic nematodes

(2011) Annelies Haegeman et al.   GENE

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

The plant apoplasm is an important recipient compartment for nematode secreted proteins

(2010) Paulo Vieira et al.   JOURNAL OF EXPERIMENTAL BOTANY

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Modular architecture and evolution of the map-1 gene family in the root-knot nematode Meloidogyne incognita

(2009) Philippe Castagnone-Sereno et al.   MOLECULAR GENETICS AND GENOMICS

A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize

(2009) BJÖRN USADEL et al.   PLANT CELL AND ENVIRONMENT

Early transcriptomic events in microdissected Arabidopsis nematode-induced giant cells

(2009) Marta Barcala et al.   PLANT JOURNAL

A defensin from tomato with dual function in defense and development

(2009) Henrik U. Stotz et al.   PLANT MOLECULAR BIOLOGY

Arabidopsis Spermidine Synthase Is Targeted by an Effector Protein of the Cyst Nematode Heterodera schachtii

(2009) T. Hewezi et al.   PLANT PHYSIOLOGY

Tomato Susceptibility to Root-Knot Nematodes Requires an Intact Jasmonic Acid Signaling Pathway

(2008) Kishor K. Bhattarai et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

(2008) Pierre Abad et al.   NATURE BIOTECHNOLOGY

An Abscisic Acid-Induced Protein, HVA22, Inhibits Gibberellin-Mediated Programmed Cell Death in Cereal Aleurone Cells

(2008) W.-J. Guo et al.   PLANT PHYSIOLOGY

Direct Identification of the Meloidogyne incognita Secretome Reveals Proteins with Host Cell Reprogramming Potential

(2008) Stéphane Bellafiore et al.   PLoS Pathogens