Transcriptomics of cereal-Fusarium graminearum interactions: what we have learned so far

Time-course expression QTL-atlas of the global transcriptional response of wheat to Fusarium graminearum

(2017) Mina Samad-Zamini et al.   PLANT BIOTECHNOLOGY JOURNAL

Transcriptome analysis of maize resistance to Fusarium graminearum

(2016) Yongjie Liu et al.   BMC GENOMICS

Differential transcriptomic responses to Fusarium graminearum infection in two barley quantitative trait loci associated with Fusarium head blight resistance

(2016) Yadong Huang et al.   BMC GENOMICS

Transcriptome dynamics of a susceptible wheat upon Fusarium head blight reveals that molecular responses to Fusarium graminearum infection fit over the grain development processes

(2016) Cherif Chetouhi et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Host-preferential Fusarium graminearum gene expression during infection of wheat, barley, and maize

(2016) Linda J. Harris et al.   Fungal Biology

High-throughput FACS-based mutant screen identifies a gain-of-function allele of the Fusarium graminearum adenylyl cyclase causing deoxynivalenol over-production

(2016) Ailisa Blum et al.   FUNGAL GENETICS AND BIOLOGY

Wheat Fhb1 encodes a chimeric lectin with agglutinin domains and a pore-forming toxin-like domain conferring resistance to Fusarium head blight

(2016) Nidhi Rawat et al.   NATURE GENETICS

Compartmentalized gene regulatory network of the pathogenic fungusFusarium graminearum

(2016) Li Guo et al.   NEW PHYTOLOGIST

Exogenous Abscisic Acid and Gibberellic Acid Elicit Opposing Effects onFusarium graminearumInfection in Wheat

(2016) Leann M. Buhrow et al.   PHYTOPATHOLOGY

Identification and characterization of a fusarium head blight resistance geneTaACTin wheat QTL-2DL

(2016) Udaykumar Kage et al.   PLANT BIOTECHNOLOGY JOURNAL

The defence-associated transcriptome of hexaploid wheat displays homoeolog expression and induction bias

(2016) Jonathan J. Powell et al.   PLANT BIOTECHNOLOGY JOURNAL

Metabolo-transcriptome profiling of barley reveals induction of chitin elicitor receptor kinase gene (HvCERK1) conferring resistance against Fusarium graminearum

(2016) Shailesh Karre et al.   PLANT MOLECULAR BIOLOGY

A Brachypodium UDP-Glycosyltransferase Confers Root Tolerance to Deoxynivalenol and Resistance to Fusarium Infection

(2016) Jean-Claude Pasquet et al.   PLANT PHYSIOLOGY

RNA-Seq Revealed Differences in Transcriptomes between 3ADON and 15ADON Populations of Fusarium graminearum In Vitro and In Planta

(2016) Krishna D. Puri et al.   PLoS One

Characterization of Triticum aestivum Abscisic Acid Receptors and a Possible Role for These in Mediating Fusairum Head Blight Susceptibility in Wheat

(2016) Cameron S. Gordon et al.   PLoS One

QTL mapping of Fusarium head blight resistance in three related durum wheat populations

(2016) Noemie Prat et al.   THEORETICAL AND APPLIED GENETICS

Suppressed recombination and unique candidate genes in the divergent haplotype encoding Fhb1, a major Fusarium head blight resistance locus in wheat

(2016) W. Schweiger et al.   THEORETICAL AND APPLIED GENETICS

Examining the Transcriptional Response in Wheat Near-Isogenic Lines to Infection and Deoxynivalenol Treatment

(2016) Anna N. Hofstad et al.   Plant Genome

Comparative Analysis of Deoxynivalenol Biosynthesis Related Gene Expression among Different Chemotypes of Fusarium graminearum in Spring Wheat

(2016) Chami C. Amarasinghe et al.   Frontiers in Microbiology

Comparison of Fusarium graminearum Transcriptomes on Living or Dead Wheat Differentiates Substrate-Responsive and Defense-Responsive Genes

(2016) Stefan Boedi et al.   Frontiers in Microbiology

Integrated Metabolo-Transcriptomics Reveals Fusarium Head Blight Candidate Resistance Genes in Wheat QTL-Fhb2

(2016) Dhananjay Dhokane et al.   PLoS One

Brachypodium as an emerging model for cereal–pathogen interactions

(2015) Timothy L. Fitzgerald et al.   ANNALS OF BOTANY

A γ-lactamase from cereal infecting Fusarium spp. catalyses the first step in the degradation of the benzoxazolinone class of phytoalexins

(2015) Andrew J. Kettle et al.   FUNGAL GENETICS AND BIOLOGY

A spontaneous segmental deletion from chromosome arm 3DL enhances Fusarium head blight resistance in wheat

(2015) David F. Garvin et al.   GENOME

A wheat ABC transporter contributes to both grain formation and mycotoxin tolerance

(2015) Stephanie Walter et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification of genes induced by Fusarium graminearum inoculation in the resistant durum wheat line Langdon(Dic-3A)10 and the susceptible parental line Langdon

(2015) Daniela Soresi et al.   MICROBIOLOGICAL RESEARCH

Insights Into Triticum aestivum Seedling Root Rot Caused by Fusarium graminearum

(2015) Qing Wang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Intraspecies Interaction of Fusarium graminearum Contributes to Reduced Toxin Production and Virulence

(2015) Sean Walkowiak et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Transgenic Wheat Expressing a Barley UDP-Glucosyltransferase Detoxifies Deoxynivalenol and Provides High Levels of Resistance toFusarium graminearum

(2015) Xin Li et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Expression profiling identifies differentially expressed genes associated with the fusarium head blight resistance QTL 2DL from the wheat variety Wuhan-1

(2015) XiangYu Long et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

Host-induced gene silencing of an essential chitin synthase gene confers durable resistance to Fusarium head blight and seedling blight in wheat

(2015) Wei Cheng et al.   PLANT BIOTECHNOLOGY JOURNAL

Host to a Stranger: Arabidopsis and Fusarium Ear Blight

(2015) Helen C. Brewer et al.   TRENDS IN PLANT SCIENCE

Joint Transcriptomic and Metabolomic Analyses Reveal Changes in the Primary Metabolism and Imbalances in the Subgenome Orchestration in the Bread Wheat Molecular Response to Fusarium graminearum

(2015) Thomas Nussbaumer et al.   G3-Genes Genomes Genetics

A Large-Scale Functional Analysis of Putative Target Genes of Mating-Type Loci Provides Insight into the Regulation of Sexual Development of the Cereal Pathogen Fusarium graminearum

(2015) Hee-Kyoung Kim et al.   PLoS Genetics

Altered Gene Expression Profiles of Wheat Genotypes against Fusarium Head Blight

(2015) Ayumi Kosaka et al.   Toxins

Transcriptome analysis of wheat inoculated with Fusarium graminearum

(2015) Mustafa Erayman et al.   Frontiers in Plant Science

An Assessment of Heavy Ion Irradiation Mutagenesis for Reverse Genetics in Wheat (Triticum aestivum L.)

(2015) Timothy L. Fitzgerald et al.   PLoS One

Fusarium oxysporum Triggers Tissue-Specific Transcriptional Reprogramming in Arabidopsis thaliana

(2015) Rebecca Lyons et al.   PLoS One

Differential gene expression and metabolomic analyses of Brachypodium distachyon infected by deoxynivalenol producing and non-producing strains of Fusarium graminearum

(2014) Jean-Claude Pasquet et al.   BMC GENOMICS

GC–MS based targeted metabolic profiling identifies changes in the wheat metabolome following deoxynivalenol treatment

(2014) Benedikt Warth et al.   Metabolomics

Current knowledge on resistance to Fusarium head blight in tetraploid wheat

(2014) Noemie Prat et al.   MOLECULAR BREEDING

Simultaneous editing of three homoeoalleles in hexaploid bread wheat confers heritable resistance to powdery mildew

(2014) Yanpeng Wang et al.   NATURE BIOTECHNOLOGY

Intervention of Phytohormone Pathways by Pathogen Effectors

(2014) K. Kazan et al.   PLANT CELL

Transcriptome profiling of wheat differentially expressed genes exposed to different chemotypes of Fusarium graminearum

(2014) Khaled Al-Taweel et al.   THEORETICAL AND APPLIED GENETICS

FusariumPathogenomics

(2013) Li-Jun Ma et al.   Annual Review of Microbiology

Transcriptome-based discovery of pathways and genes related to resistance against Fusarium head blight in wheat landrace Wangshuibai

(2013) Jin Xiao et al.   BMC GENOMICS

Quantitative trait loci-dependent analysis of a gene co-expression network associated with Fusarium head blight resistance in bread wheat (Triticum aestivum L.)

(2013) Karl G Kugler et al.   BMC GENOMICS

Trehalose 6-phosphate phosphatase is required for development, virulence and mycotoxin biosynthesis apart from trehalose biosynthesis in Fusarium graminearum

(2013) Xiu-Shi Song et al.   FUNGAL GENETICS AND BIOLOGY

Transcriptomic characterization of two majorFusariumresistance quantitative trait loci (QTLs),Fhb1andQfhs.ifa-5A, identifies novel candidate genes

(2013) Wolfgang Schweiger et al.   MOLECULAR PLANT PATHOLOGY

Cytological and Molecular Characterization of Quantitative Trait Locus qRfg1, Which Confers Resistance to Gibberella Stalk Rot in Maize

(2013) Jianrong Ye et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Functional Characterization of Two Clusters of Brachypodium distachyon UDP-Glycosyltransferases Encoding Putative Deoxynivalenol Detoxification Genes

(2013) Wolfgang Schweiger et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Host-induced gene silencing of cytochrome P450 lanosterol C14 -demethylase-encoding genes confers strong resistance to Fusarium species

(2013) A. Koch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deoxynivalenol: A Major Player in the Multifaceted Response of Fusarium to Its Environment

(2013) Kris Audenaert et al.   Toxins

Phylogenomics of the benzoxazinoid biosynthetic pathway of Poaceae: gene duplications and origin of the Bx cluster

(2012) Leslie Dutartre et al.   BMC EVOLUTIONARY BIOLOGY

Jasmonate and ethylene dependent defence gene expression and suppression of fungal virulence factors: two essential mechanisms of Fusarium head blight resistance in wheat?

(2012) Sven Gottwald et al.   BMC GENOMICS

Overexpression of wheat lipid transfer protein gene TaLTP5 increases resistances to Cochliobolus sativus and Fusarium graminearum in transgenic wheat

(2012) Xiuliang Zhu et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Transcriptome analyses during fruiting body formation in Fusarium graminearum and Fusarium verticillioides reflect species life history and ecology

(2012) Usha Rani Sikhakolli et al.   FUNGAL GENETICS AND BIOLOGY

Transgenic Arabidopsis thaliana expressing a barley UDP-glucosyltransferase exhibit resistance to the mycotoxin deoxynivalenol

(2012) Sanghyun Shin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification, characterization and mapping of differentially expressed genes in a winter wheat cultivar (Centenaire) resistant to Fusarium graminearum infection

(2012) Yordan Muhovski et al.   MOLECULAR BIOLOGY REPORTS

The Top 10 fungal pathogens in molecular plant pathology

(2012) RALPH DEAN et al.   MOLECULAR PLANT PATHOLOGY

Identification of Functional Genic Components of Major Fusarium Head Blight Resistance Quantitative Trait Loci in Wheat Cultivar Sumai 3

(2012) Yongbin Zhuang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Factors Influencing Deoxynivalenol Accumulation in Small Grain Cereals

(2012) Stephen Wegulo   Toxins

Early activation of wheat polyamine biosynthesis during Fusarium head blight implicates putrescine as an inducer of trichothecene mycotoxin production

(2011) Donald M Gardiner et al.   BMC PLANT BIOLOGY

Brachypodium distachyon: a new pathosystem to study Fusarium head blight and other Fusarium diseases of wheat

(2011) Antoine Peraldi et al.   BMC PLANT BIOLOGY

Metabolic profiling to discriminate wheat near isogenic lines, with quantitative trait loci at chromosome 2DL, varying in resistance to fusarium head blight

(2011) H. Hamzehzarghani et al.   CANADIAN JOURNAL OF PLANT SCIENCE

A fast-neutron induced chromosome fragment deletion of 3BS in wheat landrace Wangshuibai increased its susceptibility to Fusarium head blight

(2011) Jin Xiao et al.   CHROMOSOME RESEARCH

On the trail of a cereal killer: recent advances in Fusarium graminearum pathogenomics and host resistance

(2011) KEMAL KAZAN et al.   MOLECULAR PLANT PATHOLOGY

Altered trichothecene biosynthesis in TRI6-silenced transformants of Fusarium culmorum influences the severity of crown and foot rot on durum wheat seedlings

(2011) BARBARA SCHERM et al.   MOLECULAR PLANT PATHOLOGY

The Transcriptome of Fusarium graminearum During the Infection of Wheat

(2011) Erik Lysøe et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Differential transcriptome analyses of three wheat genotypes reveal different host response pathways associated with Fusarium head blight and trichothecene resistance

(2011) N. A. Foroud et al.   PLANT PATHOLOGY

Resistance to Hemi-Biotrophic F. graminearum Infection Is Associated with Coordinated and Ordered Expression of Diverse Defense Signaling Pathways

(2011) Lina Ding et al.   PLoS One

A Phenome-Based Functional Analysis of Transcription Factors in the Cereal Head Blight Fungus, Fusarium graminearum

(2011) Hokyoung Son et al.   PLoS Pathogens

Transcript profiling of the phytotoxic response of wheat to the Fusarium mycotoxin deoxynivalenol

(2011) Stephanie Walter et al.   Mycotoxin Research

Quantitative trait loci conferring resistance to Fusarium head blight in barley respond differentially to Fusarium graminearum infection

(2010) Haiyan Jia et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

The infection biology of Fusarium graminearum: Defining the pathways of spikelet to spikelet colonisation in wheat ears

(2010) Neil A. Brown et al.   Fungal Biology

Transcriptome Analysis of the Barley–Deoxynivalenol Interaction: Evidence for a Role of Glutathione in Deoxynivalenol Detoxification

(2010) Stephanie A. Gardiner et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Validation of a Candidate Deoxynivalenol-Inactivating UDP-Glucosyltransferase from Barley by Heterologous Expression in Yeast

(2010) Wolfgang Schweiger et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The Transcription Factor FgStuAp Influences Spore Development, Pathogenicity, and Secondary Metabolism inFusarium graminearum

(2010) Erik Lysøe et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

(2010) Li-Jun Ma et al.   NATURE

The 3ADON Population ofFusarium graminearumFound in North Dakota Is More Aggressive and Produces a Higher Level of DON than the Prevalent 15ADON Population in Spring Wheat

(2010) Krishna D. Puri et al.   PHYTOPATHOLOGY

A Network Approach to Predict Pathogenic Genes for Fusarium graminearum

(2010) Xiaoping Liu et al.   PLoS One

A major QTL for resistance to Gibberella stalk rot in maize

(2010) Qin Yang et al.   THEORETICAL AND APPLIED GENETICS

Nutrient profiling reveals potent inducers of trichothecene biosynthesis in Fusarium graminearum

(2009) Donald M. Gardiner et al.   FUNGAL GENETICS AND BIOLOGY

QTL-specific microarray gene expression analysis of wheat resistance to Fusarium head blight in Sumai-3 and two susceptible NILs

(2009) Saber Golkari et al.   GENOME

Molecular cloning and characterization of an up-regulated UDP-glucosyltransferase gene induced by DON from Triticum aestivum L. cv. Wangshuibai

(2009) Ma Lulin et al.   MOLECULAR BIOLOGY REPORTS

Global gene regulation byFusariumtranscription factorsTri6andTri10reveals adaptations for toxin biosynthesis

(2009) Kye-Yong Seong et al.   MOLECULAR MICROBIOLOGY

Transcriptome Analysis of a Wheat Near-Isogenic Line Pair Carrying Fusarium Head Blight–Resistant and –Susceptible Alleles

(2009) Haiyan Jia et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Novel Genes of Fusarium graminearum That Negatively Regulate Deoxynivalenol Production and Virulence

(2009) Donald M. Gardiner et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Fusarium graminearumexploits ethylene signalling to colonize dicotyledonous and monocotyledonous plants

(2009) X. Chen et al.   NEW PHYTOLOGIST

QTL mapping and marker-assisted selection forFusariumhead blight resistance in wheat: a review

(2009) H. Buerstmayr et al.   PLANT BREEDING

For Blighted Waves of Grain: Fusarium graminearum in the Postgenomics Era

(2009) F. Trail   PLANT PHYSIOLOGY

Components of the gene network associated with genotype-dependent response of wheat to the Fusarium mycotoxin deoxynivalenol

(2008) Stephanie Walter et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

TheFusariummycotoxin deoxynivalenol elicits hydrogen peroxide production, programmed cell death and defence responses in wheat

(2008) OLIVIA J. DESMOND et al.   MOLECULAR PLANT PATHOLOGY

Phases of Infection and Gene Expression ofFusarium graminearumDuring Crown Rot Disease of Wheat

(2008) Amber E. Stephens et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

(2008) Olivia J. Desmond et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

Differential gene expression of related wheat lines with contrasting levels of head blight resistance after Fusarium graminearum inoculation

(2008) Barbara Steiner et al.   THEORETICAL AND APPLIED GENETICS

An adaptive evolutionary shift in Fusarium head blight pathogen populations is driving the rapid spread of more toxigenic Fusarium graminearum in North America

(2007) Todd J. Ward et al.   FUNGAL GENETICS AND BIOLOGY