Unlocking the story in the swab: A new genotyping assay for the amphibian chytrid fungus Batrachochytrium dendrobatidis

Amphibian-killing chytrid in Brazil comprises both locally endemic and globally expanding populations

(2016) T. S. Jenkinson et al.   MOLECULAR ECOLOGY

Fixing Formalin: A Method to Recover Genomic-Scale DNA Sequence Data from Formalin-Fixed Museum Specimens Using High-Throughput Sequencing

(2015) Sarah M. Hykin et al.   PLoS One

Retrospective Survey of Museum Specimens Reveals Historically Widespread Presence of Batrachochytrium dendrobatidis in China

(2014) Wei Zhu et al.   EcoHealth

Mapping migration in a songbird using high-resolution genetic markers

(2014) Kristen C. Ruegg et al.   MOLECULAR ECOLOGY

Swabbing Often Fails to Detect Amphibian Chytridiomycosis under Conditions of Low Infection Load

(2014) Jaehyub Shin et al.   PLoS One

Surveillance for Emerging Biodiversity Diseases of Wildlife

(2014) Laura F. Grogan et al.   PLoS Pathogens

DNA Genotyping Suggests that Recent Brucellosis Outbreaks in the Greater Yellowstone Area Originated from Elk

(2013) Albano Beja-Pereira et al.   JOURNAL OF WILDLIFE DISEASES

Genetic evidence for a high diversity and wide distribution of endemic strains of the pathogenic chytrid fungus Batrachochytrium dendrobatidis in wild Asian amphibians

(2013) Arnaud Bataille et al.   MOLECULAR ECOLOGY

Long-term endemism of two highly divergent lineages of the amphibian-killing fungus in the Atlantic Forest of Brazil

(2013) D. Rodriguez et al.   MOLECULAR ECOLOGY

Mapping the Global Emergence of Batrachochytrium dendrobatidis, the Amphibian Chytrid Fungus

(2013) Deanna H. Olson et al.   PLoS One

Batrachochytrium salamandrivorans sp. nov. causes lethal chytridiomycosis in amphibians

(2013) A. Martel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complex history of the amphibian-killing chytrid fungus revealed with genome resequencing data

(2013) Erica Bree Rosenblum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Global and endemic Asian lineages of the emerging pathogenic fungus Batrachochytrium dendrobatidis widely infect amphibians in China

(2012) Changming Bai et al.   DIVERSITY AND DISTRIBUTIONS

High-throughput mutation analysis in patients with a nephronophthisis-associated ciliopathy applying multiplexed barcoded array-based PCR amplification and next-generation sequencing

(2012) Jan Halbritter et al.   JOURNAL OF MEDICAL GENETICS

Novel, panzootic and hybrid genotypes of amphibian chytridiomycosis associated with the bullfrog trade

(2012) LISA M. SCHLOEGEL et al.   MOLECULAR ECOLOGY

Skin swabbing as a new efficient DNA sampling technique in amphibians, and 14 new microsatellite markers in the alpine newt (Ichthyosaura alpestris)

(2012) J. PRUNIER et al.   Molecular Ecology Resources

Substrate-Specific Gene Expression in Batrachochytrium dendrobatidis, the Chytrid Pathogen of Amphibians

(2012) Erica Bree Rosenblum et al.   PLoS One

Extracting the amphibian chytrid fungus from formalin-fixed specimens

(2012) Kathryn L. Richards-Hrdlicka   Methods in Ecology and Evolution

Polymorphic repetitive loci of the amphibian pathogen Batrachochytrium dendrobatidis

(2011) S Garland et al.   DISEASES OF AQUATIC ORGANISMS

Multiplex preamplification PCR and microsatellite validation enables accurate single nucleotide polymorphism genotyping of historical fish scales

(2011) MATT J. SMITH et al.   Molecular Ecology Resources

Coincident mass extirpation of neotropical amphibians with the emergence of the infectious fungal pathogen Batrachochytrium dendrobatidis

(2011) T. L. Cheng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple emergences of genetically diverse amphibian-infecting chytrids include a globalized hypervirulent recombinant lineage

(2011) R. A. Farrer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

phytools: an R package for phylogenetic comparative biology (and other things)

(2011) Liam J. Revell   Methods in Ecology and Evolution

Genomic Transition to Pathogenicity in Chytrid Fungi

(2011) Suzanne Joneson et al.   PLoS Pathogens

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Avian malaria Plasmodium relictum in native Hawaiian forest birds: epizootiology and demographic impacts on ‵apapane Himatione sanguinea

(2010) Carter T. Atkinson et al.   JOURNAL OF AVIAN BIOLOGY

Ascertainment Biases in SNP Chips Affect Measures of Population Divergence

(2010) A. Albrechtsen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Epidemic disease decimates amphibian abundance, species diversity, and evolutionary history in the highlands of central Panama

(2010) A. J. Crawford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Amphibian chytridiomycosis in Japan: distribution, haplotypes and possible route of entry into Japan

(2009) KOICHI GOKA et al.   MOLECULAR ECOLOGY

Rapid Global Expansion of the Fungal Disease Chytridiomycosis into Declining and Healthy Amphibian Populations

(2009) Timothy Y. James et al.   PLoS Pathogens

Infecting epidemiology with genetics: a new frontier in disease ecology

(2008) Elizabeth A. Archie et al.   TRENDS IN ECOLOGY & EVOLUTION