Development of genome- and transcriptome-derived microsatellites in related species of snapping shrimps with highly duplicated genomes

Evolutionary transitions towards eusociality in snapping shrimps

(2017) Solomon Tin Chi Chak et al.   Nature Ecology & Evolution

Patterns of genome size variation in snapping shrimp

(2016) Nicholas W. Jeffery et al.   GENOME

Strategies for determining kinship in wild populations using genetic data

(2016) Veronika Städele et al.   Ecology and Evolution

Microsatellites from the genome and the transcriptome of the tetraploid Adriatic sturgeon,Acipenser naccarii(Bonaparte, 1836) and cross-species applicability to the diploid beluga sturgeon,Huso huso(Linnaeus, 1758)

(2015) E. Boscari et al.   JOURNAL OF APPLIED ICHTHYOLOGY

Linkage mapping with paralogs exposes regions of residual tetrasomic inheritance in chum salmon (Oncorhynchus keta)

(2015) R. K. Waples et al.   Molecular Ecology Resources

Accounting for genotype uncertainty in the estimation of allele frequencies in autopolyploids

(2015) Paul D. Blischak et al.   Molecular Ecology Resources

MCMC Methods for Multi-Response Generalized Linear Mixed Models: TheMCMCglmmRPackage

(2015) Jarrod D. Hadfield   Journal of Statistical Software

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

A comparison of single nucleotide polymorphism and microsatellite markers for analysis of parentage and kinship in a cooperatively breeding bird

(2014) Lucia R. Weinman et al.   Molecular Ecology Resources

Phylogenetic relationships within the snapping shrimp genus Synalpheus (Decapoda: Alpheidae)

(2014) Kristin M. Hultgren et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Conserved Microsatellites in Ants Enable Population Genetic and Colony Pedigree Studies across a Wide Range of Species

(2014) Ian A. Butler et al.   PLoS One

Developing conversed microsatellite markers and their implications in evolutionary analysis of the Bemisia tabaci complex

(2014) Hua-Ling Wang et al.   Scientific Reports

Identification of single nucleotide polymorphisms from the transcriptome of an organism with a whole genome duplication

(2013) Kris A Christensen et al.   BMC BIOINFORMATICS

Recent progress and challenges in population genetics of polyploid organisms: an overview of current state-of-the-art molecular and statistical tools

(2013) France Dufresne et al.   MOLECULAR ECOLOGY

A pairwise relatedness estimator for polyploids

(2013) Kang Huang et al.   Molecular Ecology Resources

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Transcriptome versus Genomic Microsatellite Markers: Highly Informative Multiplexes for Genotyping Abies alba Mill. and Congeneric Species

(2013) Dragos Postolache et al.   PLANT MOLECULAR BIOLOGY REPORTER

Cytogeography and genome size variation in the Claytonia perfoliata (Portulacaceae) polyploid complex

(2012) Patrick J. McIntyre   ANNALS OF BOTANY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Variable Changes in Genome Size Associated with Different Polyploid Events in Plantago (Plantaginaceae)

(2012) C. Wong et al.   JOURNAL OF HEREDITY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Multi-Locus Phylogeny of Sponge-Dwelling Snapping Shrimp (Caridea: Alpheidae: Synalpheus) Supports Morphology-Based Species Concepts

(2011) Kristin M. Hultgren et al.   JOURNAL OF CRUSTACEAN BIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Development and interspecific transferability of genic microsatellite markers in Spartina spp. with different genome size

(2009) Niranjan Baisakh et al.   AQUATIC BOTANY

STORM: software for testing hypotheses of relatedness and mating patterns

(2009) TIMOTHY R. FRASIER   Molecular Ecology Resources

Genome size dynamics in Artemisia L. (Asteraceae): following the track of polyploidy

(2009) J. Pellicer et al.   PLANT BIOLOGY

Kin structure, ecology and the evolution of social organization in shrimp: a comparative analysis

(2009) J. E. Duffy et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Microsatellite development suggests evidence of polyploidy in the social sponge-dwelling snapping shrimpZuzalpheus brooksi

(2008) DUSTIN R. RUBENSTEIN et al.   Molecular Ecology Resources

Evidence of neutral transcriptome evolution in plants

(2008) M. R. Broadley et al.   NEW PHYTOLOGIST

Isolation and characterization of microsatellite markers from the white-ruffed manakin Corapipo altera (Aves, Pipridae)

(2007) JACOB R. BARNETT et al.   Molecular Ecology Resources

msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design

(2007) BRANT C. FAIRCLOTH   Molecular Ecology Resources