Isolation with asymmetric gene flow during the nonsynchronous divergence of dry forest birds

Asynchronous demographic responses to Pleistocene climate change in Eastern Nearctic vertebrates

(2016) Frank T. Burbrink et al.   ECOLOGY LETTERS

Phylogeographic concordance factors quantify phylogeographic congruence among co-distributed species in theSarracenia alatapitcher plant system

(2016) Jordan D. Satler et al.   EVOLUTION

Asynchronous diversification of snakes in the North American warm deserts

(2016) Edward A. Myers et al.   JOURNAL OF BIOGEOGRAPHY

Inferring responses to climate dynamics from historical demography in neotropical forest lizards

(2016) Ivan Prates et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The changing diversity and distribution of dry forest passerine birds in northwestern Peru since the last ice age

(2015) Jessica A. Oswald et al.   AUK

Historical climatic variability and geographical barriers as drivers of community composition in a biodiversity hotspot

(2015) Jessica A. Oswald et al.   JOURNAL OF BIOGEOGRAPHY

The aggregate site frequency spectrum for comparative population genomic inference

(2015) Alexander T. Xue et al.   MOLECULAR ECOLOGY

A new time tree reveals Earth historys imprint on the evolution of modern birds

(2015) S. Claramunt et al.   Science Advances

PyRAD: assembly of de novo RADseq loci for phylogenetic analyses

(2014) Deren A. R. Eaton   BIOINFORMATICS

Differential high-altitude adaptation and restricted gene flow across a mid-elevation hybrid zone in Andean tit-tyrant flycatchers

(2014) Shane G. DuBay et al.   MOLECULAR ECOLOGY

Strong spatial structure, Pliocene diversification and cryptic diversity in the Neotropical dry forest spiderSicarius cariri

(2014) Ivan L. F. Magalhaes et al.   MOLECULAR ECOLOGY

The drivers of tropical speciation

(2014) Brian Tilston Smith et al.   NATURE

Amplification Biases and Consistent Recovery of Loci in a Double-Digest RAD-seq Protocol

(2014) Jeffrey M. DaCosta et al.   PLoS One

MTML-msBayes: Approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity

(2013) Wen Huang et al.   BMC BIOINFORMATICS

Woody vegetation of a Peruvian tropical dry forest along a climatic gradient depends more on soil than annual precipitation

(2013) Jannes Muenchow et al.   Erdkunde

Biogeography and evolutionary history of the Neotropical genusSaltator(Aves: Thraupini)

(2013) Jaime A. Chaves et al.   JOURNAL OF BIOGEOGRAPHY

Late Pleistocene glacial forest of Humaitá—Western Amazonia

(2013) M.C.L. Cohen et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY

Target Capture and Massively Parallel Sequencing of Ultraconserved Elements for Comparative Studies at Shallow Evolutionary Time Scales

(2013) Brian Tilston Smith et al.   SYSTEMATIC BIOLOGY

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

The latitudinal gradient in dispersal constraints: ecological specialisation drives diversification in tropical birds

(2012) Claire L. Salisbury et al.   ECOLOGY LETTERS

DEEP DIVERSIFICATION AND LONG-TERM PERSISTENCE IN THE SOUTH AMERICAN ‘DRY DIAGONAL’: INTEGRATING CONTINENT-WIDE PHYLOGEOGRAPHY AND DISTRIBUTION MODELING OF GECKOS

(2012) Fernanda P. Werneck et al.   EVOLUTION

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Evaluating the role of contracting and expanding rainforest in initiating cycles of speciation across the Isthmus of Panama

(2012) B. T. Smith et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolutionary islands in the Andes: persistence and isolation explain high endemism in Andean dry tropical forests

(2011) Tiina Särkinen et al.   JOURNAL OF BIOGEOGRAPHY

Applications of next-generation sequencing to phylogeography and phylogenetics

(2011) John E. McCormack et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Bayesian inference of ancient human demography from individual genome sequences

(2011) Ilan Gronau et al.   NATURE GENETICS

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Forgotten forests - issues and prospects in biome mapping using Seasonally Dry Tropical Forests as a case study

(2011) Tiina Särkinen et al.   BMC ECOLOGY

Divergence with Gene Flow: Models and Data

(2010) Catarina Pinho et al.   Annual Review of Ecology Evolution and Systematics

Contrasting plant diversification histories within the Andean biodiversity hotspot

(2010) R. T. Pennington et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular evolution of genes in avian genomes

(2010) Kiwoong Nam et al.   GENOME BIOLOGY

Woody Plant Diversity, Evolution, and Ecology in the Tropics: Perspectives from Seasonally Dry Tropical Forests

(2009) R. Toby Pennington et al.   Annual Review of Ecology Evolution and Systematics

Diversity and endemism of woody plant species in the Equatorial Pacific seasonally dry forests

(2009) Reynaldo Linares-Palomino et al.   BIODIVERSITY AND CONSERVATION

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

MIGRATION-SELECTION BALANCE AND LOCAL ADAPTATION OF MITOCHONDRIAL HAPLOTYPES IN RUFOUS-COLLARED SPARROWS (ZONOTRICHIA CAPENSIS) ALONG AN ELEVATIONAL GRADIENT

(2009) Zachary A. Cheviron et al.   EVOLUTION

An information-theoretical approach to phylogeography

(2009) BRYAN C. CARSTENS et al.   MOLECULAR ECOLOGY

Phylogeography’s past, present, and future: 10 years after Avise, 2000

(2009) M.J. Hickerson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics

Speciation with gene flow could be common

(2008) PATRIK NOSIL   MOLECULAR ECOLOGY