Interspecific hybridization causes long-term phylogenetic discordance between nuclear and mitochondrial genomes in freshwater fishes

The importance of ecological and behavioural data in studies of hybridisation among marine fishes

(2016) Stefano R. Montanari et al.   REVIEWS IN FISH BIOLOGY AND FISHERIES

Shaking up the Tree of Life

(2016) Elizabeth Pennisi   SCIENCE

Phylogeny, hybridization, and life history evolution of Rhinogobius gobies in Japan, inferred from multiple nuclear gene sequences

(2015) Yo Y. Yamasaki et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Origin and intra-island diversification of Sulawesi endemic Adrianichthyidae

(2015) Daniel F. Mokodongan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeny and polyploidy: Resolving the classification of cyprinine fishes (Teleostei: Cypriniformes)

(2015) Lei Yang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Rapid biological speciation driven by tectonic evolution in New Zealand

(2015) Dave Craw et al.   Nature Geoscience

Geology shapes biogeography: Quaternary river-capture explains New Zealand's biologically ‘composite’ Taieri River

(2015) Jonathan M. Waters et al.   QUATERNARY SCIENCE REVIEWS

Does genetic distance between parental species influence outcomes of hybridization among coral reef butterflyfishes?

(2014) Stefano R. Montanari et al.   MOLECULAR ECOLOGY

Phylogenomics resolves the timing and pattern of insect evolution

(2014) B. Misof et al.   SCIENCE

Extensive introgression in a malaria vector species complex revealed by phylogenomics

(2014) M. C. Fontaine et al.   SCIENCE

The genomic landscape underlying phenotypic integrity in the face of gene flow in crows

(2014) J. W. Poelstra et al.   SCIENCE

Molecular phylogeny and new classification of the genera Eulophias and Zoarchias (PISCES, Zoarcoidei)

(2013) Hyuck Joon Kwun et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Outgroup effects on root position and tree topology in the AFLP phylogeny of a rapidly radiating lineage of cichlid fish

(2013) Paul C. Kirchberger et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenetic relationships of North American western chubs of the genus Gila (Cyprinidae, Teleostei), with emphasis on southern species

(2013) Susana Schönhuth et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Inferring ancient divergences requires genes with strong phylogenetic signals

(2013) Leonidas Salichos et al.   NATURE

Computational approaches to species phylogeny inference and gene tree reconciliation

(2013) Luay Nakhleh   TRENDS IN ECOLOGY & EVOLUTION

THE LANGUAGE OF SPECIATION

(2012) Richard G. Harrison   EVOLUTION

Phylogeographical patterns shed light on evolutionary process in South America

(2012) A. C. Turchetto-Zolet et al.   MOLECULAR ECOLOGY

The biogeography of mitochondrial and nuclear discordance in animals

(2012) DAVID P. L. TOEWS et al.   MOLECULAR ECOLOGY

Rapid diversification in the North American minnow genus Nocomis

(2012) Brett C. Nagle et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A different perspective on the phylogenetic relationships of the Moxostomatini (Cypriniformes: Catostomidae) based on cytochrome-b and Growth Hormone intron sequences

(2012) Mark D. Clements et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Gene trees, species trees, and morphology converge on a similar phylogeny of living gars (Actinopterygii: Holostei: Lepisosteidae), an ancient clade of ray-finned fishes

(2012) Jeremy J. Wright et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny

(2012) M. dos Reis et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Nuclear Genomic Sequences Reveal that Polar Bears Are an Old and Distinct Bear Lineage

(2012) F. Hailer et al.   SCIENCE

The Probability of a Gene Tree Topology within a Phylogenetic Network with Applications to Hybridization Detection

(2012) Yun Yu et al.   PLoS Genetics

Expanding hybrid zone between Solea aegyptiaca and Solea senegalensis: genetic evidence over two decades

(2011) K. OUANES et al.   MOLECULAR ECOLOGY

Evolution of a Neotropical marine fish lineage (Subfamily Chaenopsinae, Suborder Blennioidei) based on phylogenetic analysis of combined molecular and morphological data

(2011) Hsiu-Chin Lin et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeny of the Southeast Asian freshwater fish genus Pangio (Cypriniformes; Cobitidae)

(2011) Jörg Bohlen et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenetic relationships of the North American cyprinid subgenus Hydrophlox

(2011) Mollie F. Cashner et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Reconciling gene trees of eastern North American minnows

(2011) Phillip R. Hollingsworth et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeny, diversity, and species delimitation of the North American Round-Nosed Minnows (Teleostei: Dionda), as inferred from mitochondrial and nuclear DNA sequences

(2011) Susana Schönhuth et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Reef fish hybridization: lessons learnt from butterflyfishes (genusChaetodon)

(2011) Stefano R. Montanari et al.   Ecology and Evolution

Phylogenetic studies of sinipercid fish (Perciformes: Sinipercidae) based on multiple genes, with first application of an immune-related gene, the virus-induced protein (viperin) gene

(2010) Dali Chen et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Evolutionary history of the Lake Tanganyika cichlid tribe Lamprologini (Teleostei: Perciformes) derived from mitochondrial and nuclear DNA data

(2010) Christian Sturmbauer et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Molecular systematics of the enigmatic Middle American genus Vieja (Teleostei: Cichlidae)

(2010) Caleb D. McMahan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeny of hammerhead sharks (Family Sphyrnidae) inferred from mitochondrial and nuclear genes

(2010) Douglas D. Lim et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A reappraisal of the evolution of Asian snakehead fishes (Pisces, Channidae) using molecular data from multiple genes and fossil calibration

(2010) Eleanor A.S. Adamson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Gene Trees versus Species Trees: Reassessing Life-History Evolution in a Freshwater Fish Radiation

(2010) Jonathan M. Waters et al.   SYSTEMATIC BIOLOGY

A Statistical Approach for Distinguishing Hybridization and Incomplete Lineage Sorting

(2009) Simon Joly et al.   AMERICAN NATURALIST

STEM: species tree estimation using maximum likelihood for gene trees under coalescence

(2009) Laura S. Kubatko et al.   BIOINFORMATICS

Frequent mitochondrial gene introgression among high elevation Tibetan megophryid frogs revealed by conflicting gene genealogies

(2009) WEI CHEN et al.   MOLECULAR ECOLOGY

New Zealand phylogeography: evolution on a small continent

(2009) GRAHAM P. WALLIS et al.   MOLECULAR ECOLOGY

Phylogenetic relationships of Gymnothorax bacalladoi Böhlke and Brito (1987) a poorly known moray of the Macaronesian islands

(2009) V.C. Almada et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenetic relationships in the genus Cyprinella (Actinopterygii: Cyprinidae) based on mitochondrial and nuclear gene sequences

(2009) Susana Schönhuth et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeny, biogeography, and electric signal evolution of Neotropical knifefishes of the genus Gymnotus (Osteichthyes: Gymnotidae)

(2009) Nathan R. Lovejoy et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Rapid radiation, ancient incomplete lineage sorting and ancient hybridization in the endemic Lake Tanganyika cichlid tribe Tropheini

(2009) Stephan Koblmüller et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Threats to Freshwater Fish

(2009) A. E. Magurran   SCIENCE

Identifying Hybridization Events in the Presence of Coalescence via Model Selection

(2009) Laura Salter Kubatko   SYSTEMATIC BIOLOGY

Conflicting Mitochondrial and Nuclear Phylogenies for the Widely Disjunct Emys (Testudines: Emydidae) Species Complex, and What They Tell Us about Biogeography and Hybridization

(2009) Phillip Q. Spinks et al.   SYSTEMATIC BIOLOGY

Estimating Species Trees: Methods of Phylogenetic Analysis When There Is Incongruence across Genes

(2009) L. Lacey Knowles   SYSTEMATIC BIOLOGY

Phylogenetic Analysis in the Anomaly Zone

(2009) Liang Liu et al.   SYSTEMATIC BIOLOGY

Species as Ranked Taxa

(2009) David A. Baum   SYSTEMATIC BIOLOGY

Gene tree discordance, phylogenetic inference and the multispecies coalescent

(2009) James H. Degnan et al.   TRENDS IN ECOLOGY & EVOLUTION

Using supernetworks to distinguish hybridization from lineage-sorting

(2008) Barbara R Holland et al.   BMC EVOLUTIONARY BIOLOGY

IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?

(2008) Scott V. Edwards   EVOLUTION

Phylogenetic relationships and the evolution of regulatory gene sequences in the parrotfishes

(2008) Lydia L. Smith et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Historical biogeography and speciation in the reef fish genus Haemulon (Teleostei: Haemulidae)

(2008) Luiz A. Rocha et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Molecular evolution of southern North American Cyprinidae (Actinopterygii), with the description of the new genus Tampichthys from central Mexico

(2008) Susana Schönhuth et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenetics of notothenioid fishes (Teleostei: Acanthomorpha): Inferences from mitochondrial and nuclear gene sequences

(2008) Thomas J. Near et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Molecular phylogeny of the freshwater fish family Cobitidae (Cypriniformes: Teleostei): Delimitation of genera, mitochondrial introgression and evolution of sexual dimorphism

(2008) Vendula Šlechtová et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Molecular resolution of the systematics of a problematic group of fishes (Teleostei: Osmeridae) and evidence for morphological homoplasy

(2008) Katriina L. Ilves et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Assessing phylogenetic resolution among mitochondrial, nuclear, and morphological datasets in Nothonotus darters (Teleostei: Percidae)

(2007) Benjamin P. Keck et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The molecular diversity of adriatic spined loaches (Teleostei, Cobitidae)

(2007) Anabel Perdices et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genetic diversity in New Zealand Galaxias vulgaris sensu lato (Teleostei: Osmeriformes: Galaxiidae): a test of a biogeographic hypothesis

(2003) Graham P. Wallis et al.   JOURNAL OF BIOGEOGRAPHY