Host and tissue variations overshadow the response of boreal moss-associated fungal communities to increased nitrogen load

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Indexed PCR Primers Induce Template-Specific Bias in Large-Scale DNA Sequencing Studies

(2016) James L. O’Donnell et al.   PLoS One

Ectomycorrhizal community structure and function in interior spruce forests of British Columbia under long term fertilization

(2015) Tristyn N. Hay et al.   FOREST ECOLOGY AND MANAGEMENT

Anthropogenic nitrogen deposition enhances carbon sequestration in boreal soils

(2015) Nadia I. Maaroufi et al.   GLOBAL CHANGE BIOLOGY

Mycorrhizal fungi mediation of terrestrial ecosystem responses to global change: mini-review

(2014) Jacqueline E. Mohan et al.   Fungal Ecology

Ectomycorrhizal fungi - potential organic matter decomposers, yet not saprotrophs

(2014) Björn D. Lindahl et al.   NEW PHYTOLOGIST

Forests trapped in nitrogen limitation - an ecological market perspective on ectomycorrhizal symbiosis

(2014) Oskar Franklin et al.   NEW PHYTOLOGIST

The impact of simulated chronic nitrogen deposition on the biomass and N2-fixation activity of two boreal feather moss-cyanobacteria associations

(2013) M. J. Gundale et al.   Biology Letters

Leaf-inhabiting endophytic fungi of European Beech (Fagus sylvatica L.) co-occur in leaf litter but are rare on decaying wood of the same host

(2013) Martin Unterseher et al.   FUNGAL DIVERSITY

Bryophyte-cyanobacteria associations as regulators of the northern latitude carbon balance in response to global change

(2013) Zoë Lindo et al.   GLOBAL CHANGE BIOLOGY

Regional scale gradients of climate and nitrogen deposition drive variation in ectomycorrhizal fungal communities associated with native Scots pine

(2013) S. Jarvis et al.   GLOBAL CHANGE BIOLOGY

Growth of ectomycorrhizal fungal mycelium along a Norway spruce forest nitrogen deposition gradient and its effect on nitrogen leakage

(2013) Adam Bahr et al.   SOIL BIOLOGY & BIOCHEMISTRY

Functional responses of ectomycorrhizal fungal communities to long-term fertilization of lodgepole pine (Pinus contorta Dougl. ex Loud. var. latifolia Engelm.) stands in central British Columbia

(2012) Melanie D. Jones et al.   APPLIED SOIL ECOLOGY

Response of decomposing litter and its microbial community to multiple forms of nitrogen enrichment

(2012) Sarah E. Hobbie et al.   ECOLOGICAL MONOGRAPHS

Don't make a mista(g)ke: is tag switching an overlooked source of error in amplicon pyrosequencing studies?

(2012) Tor Carlsen et al.   Fungal Ecology

Fungal community on decomposing leaf litter undergoes rapid successional changes

(2012) Jana Voříšková et al.   ISME Journal

Amplicon-pyrosequencing-based detection of compositional shifts in bryophyte-associated fungal communities along an elevation gradient

(2012) Marie L. Davey et al.   MOLECULAR ECOLOGY

Ectomycorrhizal iconoclasts: the ITS rDNA diversity and nitrophilic tendencies of fetid Russula

(2012) P. G. Avis   MYCOLOGIA

Dramatic changes in ectomycorrhizal community composition, root tip abundance and mycelial production along a stand-scale nitrogen deposition gradient

(2012) Rasmus Kjøller et al.   NEW PHYTOLOGIST

Seasonal trends in the biomass and structure of bryophyte-associated fungal communities explored by 454 pyrosequencing

(2012) Marie L. Davey et al.   NEW PHYTOLOGIST

Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification

(2011) David Berry et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Role of selected dark septate endophyte species and other hyphomycetes as saprobes on moss gametophytes

(2011) Melissa J. Day et al.   Botany

In vitro degradation of the moss Hylocomium splendens by three pleosporalean fungi

(2011) Melissa J. Day et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes

(2011) Thomas M. Gihring et al.   ENVIRONMENTAL MICROBIOLOGY

Multiple markers pyrosequencing reveals highly diverse and host-specific fungal communities on the mangrove trees Avicennia marina and Rhizophora stylosa

(2011) Yonathan Arfi et al.   FEMS MICROBIOLOGY ECOLOGY

Assessment of soil fungal diversity in different alpine tundra habitats by means of pyrosequencing

(2011) Guillaume Lentendu et al.   FUNGAL DIVERSITY

Bryophytes attenuate anthropogenic nitrogen inputs in boreal forests

(2011) MICHAEL J. GUNDALE et al.   GLOBAL CHANGE BIOLOGY

Impacts of atmospheric nitrogen deposition: responses of multiple plant and soil parameters across contrasting ecosystems in long-term field experiments

(2011) Gareth K. Phoenix et al.   GLOBAL CHANGE BIOLOGY

Changes in the root-associated fungal communities along a primary succession gradient analysed by 454 pyrosequencing

(2011) RAKEL BLAALID et al.   MOLECULAR ECOLOGY

High consistency between replicate 454 pyrosequencing analyses of ectomycorrhizal plant root samples

(2011) Håvard Kauserud et al.   MYCORRHIZA

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

(2010) Eva Bellemain et al.   BMC MICROBIOLOGY

Quantitative Assessment of the Human Gut Microbiome Using Multitag Pyrosequencing

(2010) Patrick Gillevet et al.   CHEMISTRY & BIODIVERSITY

Global assessment of nitrogen deposition effects on terrestrial plant diversity: a synthesis

(2010) R. Bobbink et al.   ECOLOGICAL APPLICATIONS

Nitrogen availability is a primary determinant of conifer mycorrhizas across complex environmental gradients

(2010) Filipa Cox et al.   ECOLOGY LETTERS

The Bryosphere: An Integral and Influential Component of the Earth’s Biosphere

(2010) Zoë Lindo et al.   ECOSYSTEMS

Massively parallel 454-sequencing of fungal communities inQuercusspp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites

(2010) ARI JUMPPONEN et al.   MOLECULAR ECOLOGY

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

(2010) ANTHONY S. AMEND et al.   MOLECULAR ECOLOGY

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

(2010) Jens Reeder et al.   NATURE METHODS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

(2010) Leho Tedersoo et al.   NEW PHYTOLOGIST

DNA barcoding of arbuscular mycorrhizal fungi

(2010) Herbert Stockinger et al.   NEW PHYTOLOGIST

Long-term dynamics of aboveground fungal communities in a subalpine Norway spruce forest under elevated nitrogen input

(2010) François Gillet et al.   OECOLOGIA

The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies

(2010) Patrick D. Schloss   PLoS Computational Biology

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Nitrogen deposition causes widespread loss of species richness in British habitats

(2009) LINDSAY C. MASKELL et al.   GLOBAL CHANGE BIOLOGY

Nitrogen form influences the response of Deschampsia antarctica to dark septate root endophytes

(2009) Rebecca Upson et al.   MYCORRHIZA

Accurate determination of microbial diversity from 454 pyrosequencing data

(2009) Christopher Quince et al.   NATURE METHODS

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

(2009) M. Buée et al.   NEW PHYTOLOGIST

Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperateQuercus macrocarpaphyllosphere

(2009) A. Jumpponen et al.   NEW PHYTOLOGIST

Nitrogen fixation in mixed Hylocomium splendens moss communities

(2009) O. Zackrisson et al.   OECOLOGIA

No evidence that nitrogen enrichment affect fungal communities of Vaccinium roots in two contrasting boreal forest types

(2009) Takahide A. Ishida et al.   SOIL BIOLOGY & BIOCHEMISTRY

Fungal biomass associated with the phyllosphere of bryophytes and vascular plants

(2009) M.L. Davey et al.  

High diversity of fungi associated with living parts of boreal forest bryophytes

(2008) Håvard Kauserud et al.   Botany

Nitrogen additions and microbial biomass: a meta-analysis of ecosystem studies

(2008) Kathleen K. Treseder   ECOLOGY LETTERS

Near-zero recent carbon accumulation in a bog with high nitrogen deposition in SW Sweden

(2008) URBAN GUNNARSSON et al.   GLOBAL CHANGE BIOLOGY

Epiphytic lichen biomass in a boreal Norway spruce forest

(2008) Yngvar GAUSLAA et al.   LICHENOLOGIST

An Earth-system perspective of the global nitrogen cycle

(2008) Nicolas Gruber et al.   NATURE

Site identity and moss species as determinants of soil microbial community structure in Norway spruce forests across three vegetation zones

(2008) Lisbet Holm Bach et al.   PLANT AND SOIL

Low levels of nitrogen addition stimulate decomposition by boreal forest fungi

(2008) Steven D. Allison et al.   SOIL BIOLOGY & BIOCHEMISTRY