A model-based approach to characterize individual inbreeding at both global and local genomic scales

Inferring Individual Inbreeding and Demographic History from Segments of Identity by Descent in Ficedula Flycatcher Genome Sequences

(2017) Marty Kardos et al.   GENETICS

Inferring Individual Inbreeding and Demographic History from Segments of Identity by Descent in Ficedula Flycatcher Genome Sequences

(2017) Marty Kardos et al.   GENETICS

Is There a Genetic Paradox of Biological Invasion?

(2016) Arnaud Estoup et al.   Annual Review of Ecology Evolution and Systematics

BCFtools/RoH: a hidden Markov model approach for detecting autozygosity from next-generation sequencing data

(2016) Vagheesh Narasimhan et al.   BIOINFORMATICS

Estimating IBD tracts from low coverage NGS data

(2016) Filipe G. Vieira et al.   BIOINFORMATICS

ARGON: fast, whole-genome simulation of the discrete time Wright-fisher process

(2016) Pier Francesco Palamara   BIOINFORMATICS

Genomics advances the study of inbreeding depression in the wild

(2016) Marty Kardos et al.   Evolutionary Applications

Conserved Genetic Architecture Underlying Individual Recombination Rate Variation in a Wild Population of Soay Sheep ( Ovis aries )

(2016) Susan E. Johnston et al.   GENETICS

Inbreeding load and purging: implications for the short-term survival and the conservation management of small populations

(2016) A Caballero et al.   HEREDITY

Pedigrees or markers: Which are better in estimating relatedness and inbreeding coefficient?

(2016) Jinliang Wang   THEORETICAL POPULATION BIOLOGY

Understanding Inbreeding Depression, Purging, and Genetic Rescue

(2016) Philip W. Hedrick et al.   TRENDS IN ECOLOGY & EVOLUTION

Conserved Genetic Architecture Underlying Individual Recombination Rate Variation in a Wild Population of Soay Sheep ( Ovis aries )

(2016) Susan E. Johnston et al.   GENETICS

Accurate Non-parametric Estimation of Recent Effective Population Size from Segments of Identity by Descent

(2015) Sharon R. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

WIDDE: a Web-Interfaced next generation database for genetic diversity exploration, with a first application in cattle

(2015) Guilhem Sempéré et al.   BMC GENOMICS

Measuring individual inbreeding in the age of genomics: marker-based measures are better than pedigrees

(2015) M Kardos et al.   HEREDITY

Inbreeding depression in livestock species: review and meta-analysis

(2014) G. Leroy   ANIMAL GENETICS

Inbreeding Coefficient Estimation with Dense SNP Data: Comparison of Strategies and Application to HapMap III

(2014) Steven Gazal et al.   HUMAN HEREDITY

Long Runs of Homozygosity Are Enriched for Deleterious Variation

(2013) Zachary A. Szpiech et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Identity by Descent: Variation in Meiosis, Across Genomes, and in Populations

(2013) E. A. Thompson   GENETICS

Evaluation of inbreeding depression in Holstein cattle using whole-genome SNP markers and alternative measures of genomic inbreeding

(2013) D.W. Bjelland et al.   JOURNAL OF DAIRY SCIENCE

Genomic Patterns of Homozygosity in Worldwide Human Populations

(2012) Trevor J. Pemberton et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Runs of homozygosity and population history in cattle

(2012) Deirdre C Purfield et al.   BMC GENETICS

Estimates of autozygosity derived from runs of homozygosity: empirical evidence from selected cattle populations

(2012) M. Ferenčaković et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Genome-Wide Analysis of the World's Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection

(2012) James W. Kijas et al.   PLOS BIOLOGY

Regions of Homozygosity in the Porcine Genome: Consequence of Demography and the Recombination Landscape

(2012) Mirte Bosse et al.   PLoS Genetics

An ABC estimate of pedigree error rate: application in dog, sheep and cattle breeds

(2011) G. Leroy et al.   ANIMAL GENETICS

Consanguinity around the world: what do the genomic data of the HGDP-CEPH diversity panel tell us?

(2011) Anne-Louise Leutenegger et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Modeling of Identity-by-Descent Processes Along a Chromosome Between Haplotypes and Their Genotyped Ancestors

(2011) Tom Druet et al.   GENETICS

Quantification of Inbreeding Due to Distant Ancestors and Its Detection Using Dense Single Nucleotide Polymorphism Data

(2011) Matthew C. Keller et al.   GENETICS

Variation in actual relationship as a consequence of Mendelian sampling and linkage

(2011) W.G. HILL et al.   Genetics Research

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

Identification of Genomic Regions Associated with Phenotypic Variation between Dog Breeds using Selection Mapping

(2011) Amaury Vaysse et al.   PLoS Genetics

High-Resolution Detection of Identity by Descent in Unrelated Individuals

(2010) Sharon R. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Robust relationship inference in genome-wide association studies

(2010) Ani Manichaikul et al.   BIOINFORMATICS

Comparative assessment of methods for estimating individual genome-wide homozygosity-by-descent from human genomic data

(2010) Ozren Polašek et al.   BMC GENOMICS

MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes

(2010) Yun Li et al.   GENETIC EPIDEMIOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Fine-scale recombination rate differences between sexes, populations and individuals

(2010) Augustine Kong et al.   NATURE

Common SNPs explain a large proportion of the heritability for human height

(2010) Jian Yang et al.   NATURE GENETICS

Genomic Runs of Homozygosity Record Population History and Consanguinity

(2010) Mirna Kirin et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The genetics of inbreeding depression

(2009) Deborah Charlesworth et al.   NATURE REVIEWS GENETICS

Runs of Homozygosity in European Populations

(2008) Ruth McQuillan et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genome-wide autozygosity mapping in human populations

(2008) Shuang Wang et al.   GENETIC EPIDEMIOLOGY

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

Genotype, haplotype and copy-number variation in worldwide human populations

(2008) Mattias Jakobsson et al.   NATURE

Highly effective SNP-based association mapping and management of recessive defects in livestock

(2008) Carole Charlier et al.   NATURE GENETICS

Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation

(2008) J. Z. Li et al.   SCIENCE

The IBD process along four chromosomes

(2008) E.A. Thompson   THEORETICAL POPULATION BIOLOGY