Epistatic fire blight resistance QTL alleles in the apple cultivar ‘Enterprise’ and selection X-6398 discovered and characterized through pedigree-informed analysis

Deciphering the genetic control of fruit texture in apple by multiple family-based analysis and genome-wide association

(2017) Mario Di Guardo et al.   JOURNAL OF EXPERIMENTAL BOTANY

High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development

(2017) Nicolas Daccord et al.   NATURE GENETICS

Unravelling genetic diversity and cultivar parentage in the Danish apple gene bank collection

(2017) Bjarne Larsen et al.   Tree Genetics & Genomes

Predicting Flowering Behavior and Exploring Its Genetic Determinism in an Apple Multi-family Population Based on Statistical Indices and Simplified Phenotyping

(2017) Jean-Baptiste Durand et al.   Frontiers in Plant Science

Elucidation of the ‘Honeycrisp’ pedigree through haplotype analysis with a multi-family integrated SNP linkage map and a large apple (Malus×domestica) pedigree-connected SNP data set

(2017) Nicholas P Howard et al.   Horticulture Research

Analysis of the genetic diversity and structure across a wide range of germplasm reveals prominent gene flow in apple at the European level

(2016) Jorge Urrestarazu et al.   BMC PLANT BIOLOGY

Detecting QTLs and putative candidate genes involved in budbreak and flowering time in an apple multiparental population

(2016) Alix Allard et al.   JOURNAL OF EXPERIMENTAL BOTANY

PediHaplotyper: software for consistent assignment of marker haplotypes in pedigrees

(2016) Roeland E. Voorrips et al.   MOLECULAR BREEDING

Development and validation of the Axiom®Apple480K SNP genotyping array

(2016) Luca Bianco et al.   PLANT JOURNAL

Genetic Diversity, Population Structure, Parentage Analysis, and Construction of Core Collections in the French Apple Germplasm Based on SSR Markers

(2016) Ludivine Lassois et al.   PLANT MOLECULAR BIOLOGY REPORTER

FaRXf1: a locus conferring resistance to angular leaf spot caused by Xanthomonas fragariae in octoploid strawberry

(2016) Jack A. Roach et al.   THEORETICAL AND APPLIED GENETICS

Polygenic inheritance of resistance to Cacopsylla pyri in a Pyrus communis × P. ussuriensis progeny is explained by three QTLs involving an epistatic interaction

(2016) Perchepied L. et al.   Tree Genetics & Genomes

QTL mapping and breeding value estimation through pedigree-based analysis of fruit size and weight in four diverse peach breeding programs

(2016) Jonathan Fresnedo-Ramírez et al.   Tree Genetics & Genomes

A high-density, multi-parental SNP genetic map on apple validates a new mapping approach for outcrossing species

(2016) Erica A Di Pierro et al.   Horticulture Research

ASSIsT: an automatic SNP scoring tool for in- and outbreeding species

(2015) Mario Di Guardo et al.   BIOINFORMATICS

Editing plant genomes with CRISPR/Cas9

(2015) Khaoula Belhaj et al.   CURRENT OPINION IN BIOTECHNOLOGY

Molecular Characterisation of the Swiss Fruit Genetic Resources

(2015) Andreas Bühlmann et al.   Erwerbs-Obstbau

QTLs detected for individual sugars and soluble solids content in apple

(2015) Yingzhu Guan et al.   MOLECULAR BREEDING

QTL mapping of pomological traits in peach and related species breeding germplasm

(2015) Jonathan Fresnedo-Ramírez et al.   MOLECULAR BREEDING

Breeding Elite Lines of Apple Carrying Pyramided Homozygous Resistance Genes Against Apple Scab and Resistance Against Powdery Mildew and Fire Blight

(2015) Isabelle O. Baumgartner et al.   PLANT MOLECULAR BIOLOGY REPORTER

Polyploid and aneuploid detection in apple using a single nucleotide polymorphism array

(2015) David Chagné et al.   Tree Genetics & Genomes

Quantitative trait loci from the host genetic background modulate the durability of a resistance gene: a rational basis for sustainable resistance breeding in plants

(2014) J Quenouille et al.   HEREDITY

Erosion of quantitative host resistance in the apple×Venturia inaequalis pathosystem

(2014) Valérie Caffier et al.   INFECTION GENETICS AND EVOLUTION

Identification of a major quantitative trait locus for resistance to fire blight in the wild apple species Malus fusca

(2014) Ofere Emeriewen et al.   MOLECULAR BREEDING

One-step reconstruction of multi-generation pedigree networks in apple (Malus × domestica Borkh.) and the parentage of Golden Delicious

(2014) Silvio Salvi et al.   MOLECULAR BREEDING

Engineering fire blight resistance into the apple cultivar ‘Gala’ using theFB_MR5CC-NBS-LRR resistance gene ofMalus × robusta5

(2014) Giovanni A. L. Broggini et al.   PLANT BIOTECHNOLOGY JOURNAL

Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh)

(2014) Luca Bianco et al.   PLoS One

Bayesian QTL analyses using pedigreed families of an outcrossing species, with application to fruit firmness in apple

(2014) M. C. A. M. Bink et al.   THEORETICAL AND APPLIED GENETICS

A strategy for developing representative germplasm sets for systematic QTL validation, demonstrated for apple, peach, and sweet cherry

(2014) C. P. Peace et al.   Tree Genetics & Genomes

Fruit size QTL identification and the prediction of parental QTL genotypes and breeding values in multiple pedigreed populations of sweet cherry

(2013) Umesh R. Rosyara et al.   MOLECULAR BREEDING

‘Schmidt's Antonovka’ is identical to ‘Common Antonovka’, an apple cultivar widely used in Russia in breeding for biotic and abiotic stresses

(2013) Anna Pikunova et al.   Tree Genetics & Genomes

Pedimap: Software for the Visualization of Genetic and Phenotypic Data in Pedigrees

(2012) R. E. Voorrips et al.   JOURNAL OF HEREDITY

Genome-Wide SNP Detection, Validation, and Development of an 8K SNP Array for Apple

(2012) David Chagné et al.   PLoS One

A candidate gene for fire blight resistance in Malus × robusta 5 is coding for a CC–NBS–LRR

(2012) Johannes Fahrentrapp et al.   Tree Genetics & Genomes

A high-throughput apple SNP genotyping platform using the GoldenGate™ assay

(2011) M. Awais Khan et al.   GENE

Identification of serine/threonine kinase and nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes in the fire blight resistance quantitative trait locus of apple cultivar ‘Evereste’

(2011) GABRIELLA PARRAVICINI et al.   MOLECULAR PLANT PATHOLOGY

Application of a high-speed breeding technology to apple (Malus × domestica) based on transgenic early flowering plants and marker-assisted selection

(2011) Henryk Flachowsky et al.   NEW PHYTOLOGIST

SSR marker analysis of Monilinia fructicola from Swiss apricots suggests introduction of the pathogen from neighbouring countries and the United States

(2011) M. Jänsch et al.   PLANT PATHOLOGY

Assessment of fire blight tolerance in apple based on plant inoculations with Erwinia amylovora and DNA markers

(2011) Hilde Nybom et al.   TREES-STRUCTURE AND FUNCTION

European pome fruit genetic resources evaluated for disease resistance

(2011) Markus Kellerhals et al.   TREES-STRUCTURE AND FUNCTION

Mapping of quantitative trait loci for fire blight resistance in the apple cultivars ‘Florina’ and ‘Nova Easygro’

(2010) P.-M. F. Le Roux et al.   GENOME

Genotyping of pedigreed apple breeding material with a genome-covering set of SSRs: trueness-to-type of cultivars and their parentages

(2010) K. M. Evans et al.   MOLECULAR BREEDING

The genome of the domesticated apple (Malus × domestica Borkh.)

(2010) Riccardo Velasco et al.   NATURE GENETICS

Evaluation of Kasugamycin for Fire Blight Management, Effect on Nontarget Bacteria, and Assessment of Kasugamycin Resistance Potential inErwinia amylovora

(2010) Gayle C. McGhee et al.   PHYTOPATHOLOGY

Erwinia amylovora-induced defense mechanisms of two apple species that differ in susceptibility to fire blight

(2010) Renata Milčevičová et al.   PLANT SCIENCE

Two distinct major QTL for resistance to fire blight co-localize on linkage group 12 in apple genotypes ‘Evereste’ and Malus floribunda clone 821

(2009) C.-E. Durel et al.   GENOME

Durability of plant major resistance genes to pathogens depends on the genetic background, experimental evidence and consequences for breeding strategies

(2009) A. Palloix et al.   NEW PHYTOLOGIST

Quantitative resistance increases the durability of qualitative resistance to Leptosphaeria maculans in Brassica napus

(2009) Hortense Brun et al.   NEW PHYTOLOGIST

A review on transgenic approaches to accelerate breeding of woody plants

(2009) H. Flachowsky et al.   PLANT BREEDING