Transcriptionally active LTR retroelement-related sequences and their relationship with small RNA in moso bamboo (Phyllostachys edulis)

Genome-wide characterization and evolution analysis of long terminal repeat retroelements in moso bamboo (Phyllostachys edulis)

(2017) Mingbing Zhou et al.   Tree Genetics & Genomes

Cloning and functional characterization of PjCAO gene involved in chlorophyll b biosynthesis in Pseudosasa japonica cv. Akebonosuji

(2016) Keyi Jiang et al.   TREES-STRUCTURE AND FUNCTION

Controlled activation of retrotransposition for plant breeding

(2015) Jerzy Paszkowski   CURRENT OPINION IN BIOTECHNOLOGY

Identification of genes involved in spontaneous leaf color variation in Pseudosasa japonica

(2015) H.Y. Yang et al.   GENETICS AND MOLECULAR RESEARCH

Cloning and functional characterization of PjPORB, a member of the POR gene family in Pseudosasa japonica cv. Akebonosuji

(2015) Keyi Jiang et al.   PLANT GROWTH REGULATION

Identification of genes involved in color variation of bamboo culms by suppression subtractive hybridization

(2015) Xiangwan Xia et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress

(2015) Irina Makarevitch et al.   PLoS Genetics

Small RNAs and regulation of transposons in plants

(2015) Hidetaka Ito   GENES & GENETIC SYSTEMS

Epigenetic regulation and functional exaptation of transposable elements in higher plants

(2014) Xiekui Cui et al.   CURRENT OPINION IN PLANT BIOLOGY

BambooGDB: a bamboo genome database with functional annotation and an analysis platform

(2014) H. Zhao et al.   Database-The Journal of Biological Databases and Curation

Next-generation sequencing-based mRNA and microRNA expression profiling analysis revealed pathways involved in the rapid growth of developing culms in Moso bamboo

(2013) Cai-yun He et al.   BMC PLANT BIOLOGY

Widespread, abundant, and diverse TE-associated siRNAs in developing wheat grain

(2013) Fenglong Sun et al.   GENE

The impact of transposable elements in environmental adaptation

(2013) Elena Casacuberta et al.   MOLECULAR ECOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

How important are transposons for plant evolution?

(2012) Damon Lisch   NATURE REVIEWS GENETICS

Evidence for Small RNAs Homologous to Effector-Encoding Genes and Transposable Elements in the Oomycete Phytophthora infestans

(2012) Ramesh R. Vetukuri et al.   PLoS One

Transposable element small RNAs as regulators of gene expression

(2012) Andrea D. McCue et al.   TRENDS IN GENETICS

Gene Expression and Stress Response Mediated by the Epigenetic Regulation of a Transposable Element Small RNA

(2012) Andrea D. McCue et al.   PLoS Genetics

Role of Transposon-Derived Small RNAs in the Interplay between Genomes and Parasitic DNA in Rice

(2012) Misuzu Nosaka et al.   PLoS Genetics

Characterization and Primary Functional Analysis of BvCIGR, a Member of the GRAS Gene Family in Bambusa ventricosa

(2011) Mingbing Zhou et al.   BOTANICAL REVIEW

An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress

(2011) Hidetaka Ito et al.   NATURE

Molecular Spectrum of Somaclonal Variation in Regenerated Rice Revealed by Whole-Genome Sequencing

(2011) Akio Miyao et al.   PLANT AND CELL PHYSIOLOGY

Small RNAs, DNA methylation and transposable elements in wheat

(2010) Dario Cantu et al.   BMC GENOMICS

Transcriptional activity of transposable elements in maize

(2010) Carlos M Vicient   BMC GENOMICS

The Gypsy Database (GyDB) of mobile genetic elements: release 2.0

(2010) C. Llorens et al.   NUCLEIC ACIDS RESEARCH

Epigenetics in plant tissue culture

(2010) M. J. M. Smulders et al.   PLANT GROWTH REGULATION

Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees

(2009) Carlos Llorens et al.   Biology Direct

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Transposable elements and the evolution of regulatory networks

(2008) Cédric Feschotte   NATURE REVIEWS GENETICS

Distinct size distribution of endogenous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant

(2008) K. Nobuta et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The diversity of retrotransposons and the properties of their reverse transcriptases

(2008) Thomas H. Eickbush et al.   VIRUS RESEARCH