Development of a molecular marker tightly linked to the C locus conferring a white bulb color in onion (Allium cepa L.) using bulked segregant analysis and RNA-Seq

A MYB transcription factor, DcMYB6, is involved in regulating anthocyanin biosynthesis in purple carrot taproots

(2017) Zhi-Sheng Xu et al.   Scientific Reports

Identification of two novel mutant ANS alleles responsible for inactivation of anthocyanidin synthase and failure of anthocyanin production in onion (Allium cepa L.)

(2016) Eun-Young Kim et al.   EUPHYTICA

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Onion (Allium cepa L.) R2R3-MYB Gene MYB1 Regulates Anthocyanin Biosynthesis

(2016) Kathy E. Schwinn et al.   Frontiers in Plant Science

New Challenges for the Design of High Value Plant Products: Stabilization of Anthocyanins in Plant Vacuoles

(2016) Valentina Passeri et al.   Frontiers in Plant Science

WRKY Transcription Factors: Molecular Regulation and Stress Responses in Plants

(2016) Ujjal J. Phukan et al.   Frontiers in Plant Science

Glycosylation Is a Major Regulator of Phenylpropanoid Availability and Biological Activity in Plants

(2016) Julien Le Roy et al.   Frontiers in Plant Science

Identification of candidate genes associated with fertility restoration of cytoplasmic male-sterility in onion (Allium cepa L.) using a combination of bulked segregant analysis and RNA-seq

(2015) Sunggil Kim et al.   THEORETICAL AND APPLIED GENETICS

Unique Aspects of Plant Nonsense-Mediated mRNA Decay

(2015) Orit Shaul   TRENDS IN PLANT SCIENCE

Comparative Transcriptome Analysis of Genes Involved in Anthocyanin Biosynthesis in the Red and Yellow Fruits of Sweet Cherry (Prunus avium L.)

(2015) Hairong Wei et al.   PLoS One

Integrative structural annotation of de novo RNA-Seq provides an accurate reference gene set of the enormous genome of the onion (Allium cepa L.)

(2014) S. Kim et al.   DNA RESEARCH

Genetic analyses of anthocyanin concentrations and intensity of red bulb color among segregating haploid progenies of onion

(2014) Janejira Duangjit et al.   MOLECULAR BREEDING

Characterization of three active transposable elements recently inserted in three independent DFR-A alleles and one high-copy DNA transposon isolated from the Pink allele of the ANS gene in onion (Allium cepa L.)

(2014) Sunggil Kim et al.   MOLECULAR GENETICS AND GENOMICS

De-novo RNA Sequencing and Metabolite Profiling to Identify Genes Involved in Anthocyanin Biosynthesis in Korean Black Raspberry (Rubus coreanus Miquel)

(2014) Tae Kyung Hyun et al.   PLoS One

At least nine independent natural mutations of the DFR-A gene are responsible for appearance of yellow onions (Allium cepa L.) from red progenitors

(2013) Sookyi Song et al.   MOLECULAR BREEDING

Transcriptome sequencing to produce SNP-based genetic maps of onion

(2013) J. Duangjit et al.   THEORETICAL AND APPLIED GENETICS

A Toolkit for bulk PCR-based marker design from next-generation sequence data: application for development of a framework linkage map in bulb onion (Allium cepa L.)

(2012) Samantha Baldwin et al.   BMC GENOMICS

Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat

(2012) Martin Trick et al.   BMC PLANT BIOLOGY

Gene Mapping via Bulked Segregant RNA-Seq (BSR-Seq)

(2012) Sanzhen Liu et al.   PLoS One

R2R3 MYB transcription factors: key regulators of the flavonoid biosynthetic pathway in grapevine

(2012) Stefan Czemmel et al.   PROTOPLASMA

The flavonoid quercetin in disease prevention and therapy: Facts and fancies

(2011) Maria Russo et al.   BIOCHEMICAL PHARMACOLOGY

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Recent advances in understanding the antibacterial properties of flavonoids

(2011) T.P. Tim Cushnie et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Flavonoids and their glycosides, including anthocyanins

(2011) Nigel C. Veitch et al.   NATURAL PRODUCT REPORTS

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Recent advances on the regulation of anthocyanin synthesis in reproductive organs

(2011) Katia Petroni et al.   PLANT SCIENCE

Transcriptional analysis in high-anthocyanin tomatoes reveals synergistic effect of Aft and atv genes

(2010) Giovanni Povero et al.   JOURNAL OF PLANT PHYSIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Phenylpropanoid Biosynthesis

(2009) Thomas Vogt   Molecular Plant

Enrichment of tomato fruit with health-promoting anthocyanins by expression of select transcription factors

(2008) Eugenio Butelli et al.   NATURE BIOTECHNOLOGY

Structure and function of enzymes involved in the biosynthesis of phenylpropanoids

(2008) J.-L. Ferrer et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY