Extracting microtubule networks from superresolution single-molecule localization microscopy data

Self-repair promotes microtubule rescue

(2016) Charlotte Aumeier et al.   NATURE CELL BIOLOGY

Detyrosinated microtubules buckle and bear load in contracting cardiomyocytes

(2016) P. Robison et al.   SCIENCE

Cytoskeletal Network Morphology Regulates Intracellular Transport Dynamics

(2015) David Ando et al.   BIOPHYSICAL JOURNAL

Building the Microtubule Cytoskeleton Piece by Piece

(2015) Ray Alfaro-Aco et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Microtubules self-repair in response to mechanical stress

(2015) Laura Schaedel et al.   NATURE MATERIALS

SR-Tesseler: a method to segment and quantify localization-based super-resolution microscopy data

(2015) Florian Levet et al.   NATURE METHODS

Post-translational modifications of tubulin: pathways to functional diversity of microtubules

(2015) Yuyu Song et al.   TRENDS IN CELL BIOLOGY

SOAX: A software for quantification of 3D biopolymer networks

(2015) Ting Xu et al.   Scientific Reports

Co-Orientation: Quantifying Simultaneous Co-Localization and Orientational Alignment of Filaments in Light Microscopy

(2015) Robert P. J. Nieuwenhuizen et al.   PLoS One

DeFiNe: an optimisation-based method for robust disentangling of filamentous networks

(2015) David Breuer et al.   Scientific Reports

PALMsiever: a tool to turn raw data into results for single-molecule localization microscopy

(2014) T. Pengo et al.   BIOINFORMATICS

Challenges in quantitative single molecule localization microscopy

(2014) A. Shivanandan et al.   FEBS LETTERS

A linear programming approach to reconstructing subcellular structures from confocal images for automated generation of representative 3D cellular models

(2013) Scott T. Wood et al.   MEDICAL IMAGE ANALYSIS

3D actin network centerline extraction with multiple active contours

(2013) Ting Xu et al.   MEDICAL IMAGE ANALYSIS

Measuring image resolution in optical nanoscopy

(2013) Robert P J Nieuwenhuizen et al.   NATURE METHODS

Cellular-resolution connectomics: challenges of dense neural circuit reconstruction

(2013) Moritz Helmstaedter   NATURE METHODS

Super-Resolution Microscopy Reveals Specific Recruitment of HIV-1 Envelope Proteins to Viral Assembly Sites Dependent on the Envelope C-Terminal Tail

(2013) Walter Muranyi et al.   PLoS Pathogens

Quantitative analysis of photoactivated localization microscopy (PALM) datasets using pair-correlation analysis

(2012) Prabuddha Sengupta et al.   BIOESSAYS

Cell Type-specific β2-Adrenergic Receptor Clusters Identified Using Photoactivated Localization Microscopy Are Not Lipid Raft Related, but Depend on Actin Cytoskeleton Integrity

(2012) Marco Scarselli et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Super-resolution Imaging Reveals the Internal Architecture of Nano-sized Syntaxin Clusters

(2012) Dana Bar-On et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Ultrabright photoactivatable fluorophores created by reductive caging

(2012) Joshua C Vaughan et al.   NATURE METHODS

Dual-objective STORM reveals three-dimensional filament organization in the actin cytoskeleton

(2012) Ke Xu et al.   NATURE METHODS

Correlation Functions Quantify Super-Resolution Images and Estimate Apparent Clustering Due to Over-Counting

(2012) Sarah L. Veatch et al.   PLoS One

Automated Screening of Microtubule Growth Dynamics Identifies MARK2 as a Regulator of Leading Edge Microtubules Downstream of Rac1 in Migrating Cells

(2012) Yukako Nishimura et al.   PLoS One

Counting single photoactivatable fluorescent molecules by photoactivated localization microscopy (PALM)

(2012) S.-H. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Advances in light-based imaging of three-dimensional cellular ultrastructure

(2011) Pakorn Kanchanawong et al.   CURRENT OPINION IN CELL BIOLOGY

Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging

(2011) Graham T Dempsey et al.   NATURE METHODS

Visualization of Localization Microscopy Data

(2010) David Baddeley et al.   MICROSCOPY AND MICROANALYSIS

Nanoscale architecture of integrin-based cell adhesions

(2010) Pakorn Kanchanawong et al.   NATURE

Cell mechanics and the cytoskeleton

(2010) Daniel A. Fletcher et al.   NATURE

Analysis of microtubule dynamic instability using a plus-end growth marker

(2010) Alexandre Matov et al.   NATURE METHODS

Force and Length in the Mitotic Spindle

(2009) Sophie Dumont et al.   CURRENT BIOLOGY

Microtubule assembly, organization and dynamics in axons and dendrites

(2009) Cecilia Conde et al.   NATURE REVIEWS NEUROSCIENCE

Actin, a Central Player in Cell Shape and Movement

(2009) T. D. Pollard et al.   SCIENCE

Subdiffraction-Resolution Fluorescence Imaging with Conventional Fluorescent Probes

(2008) Mike Heilemann et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Cargo transport: molecular motors navigate a complex cytoskeleton

(2008) Jennifer L Ross et al.   CURRENT OPINION IN CELL BIOLOGY

Whole-cell 3D STORM reveals interactions between cellular structures with nanometer-scale resolution

(2008) Bo Huang et al.   NATURE METHODS

Fluorescence nanoscopy by ground-state depletion and single-molecule return

(2008) Jonas Fölling et al.   NATURE METHODS

Three-Dimensional Super-Resolution Imaging by Stochastic Optical Reconstruction Microscopy

(2008) B. Huang et al.   SCIENCE