Using Supermatrices for Phylogenetic Inquiry: An Example Using the Sedges

PhyDesign: an online application for profiling phylogenetic informativeness

(2011) Francesc López-Giráldez et al.   BMC EVOLUTIONARY BIOLOGY

Can Deliberately Incomplete Gene Sample Augmentation Improve a Phylogeny Estimate for the Advanced Moths and Butterflies (Hexapoda: Lepidoptera)?

(2011) Soowon Cho et al.   SYSTEMATIC BIOLOGY

Taxon Sampling and the Optimal Rates of Evolution for Phylogenetic Inference

(2011) Jeffrey P. Townsend et al.   SYSTEMATIC BIOLOGY

Missing Data in Phylogenetic Analysis: Reconciling Results from Simulations and Empirical Data

(2011) John J. Wiens et al.   SYSTEMATIC BIOLOGY

Phylogenomics with incomplete taxon coverage: the limits to inference

(2010) Michael J Sanderson et al.   BMC EVOLUTIONARY BIOLOGY

A supermatrix-based molecular phylogeny of the family Drosophilidae

(2010) KIM VAN DER LINDE et al.   Genetics Research

Deep Genomic-Scale Analyses of the Metazoa Reject Coelomata: Evidence from Single- and Multigene Families Analyzed Under a Supertree and Supermatrix Paradigm

(2010) Thérèse A. Holton et al.   Genome Biology and Evolution

Supermatrix and species tree methods resolve phylogenetic relationships within the big cats, Panthera (Carnivora: Felidae)

(2010) Brian W. Davis et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Optimal Selection of Gene and Ingroup Taxon Sampling for Resolving Phylogenetic Relationships

(2010) Jeffrey P. Townsend et al.   SYSTEMATIC BIOLOGY

Phylogenetic Relationships in Eleocharis (Cyperaceae): C4 Photosynthesis Origins and Patterns of Diversification in the Spikerushes

(2010) Eric H. Roalson et al.   SYSTEMATIC BOTANY

Stem architecture in Eleocharis subgenus Limnochloa (Cyperaceae): Evidence of dynamic morphological evolution in a group of pantropical sedges

(2009) Cody E. Hinchliff et al.   AMERICAN JOURNAL OF BOTANY

Characterizing phylogenetically decisive taxon coverage

(2009) Mike Steel et al.   APPLIED MATHEMATICS LETTERS

Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches

(2009) Stephen A Smith et al.   BMC EVOLUTIONARY BIOLOGY

Effects of data incompleteness on the relative performance of parsimony and Bayesian approaches in a supermatrix phylogenetic reconstruction of Mustelidae and Procyonidae (Carnivora)

(2009) Mieczyslaw Wolsan et al.   CLADISTICS

The Use and Validity of Composite Taxa in Phylogenetic Analysis

(2009) Véronique Campbell et al.   SYSTEMATIC BIOLOGY

The Effect of Ambiguous Data on Phylogenetic Estimates Obtained by Maximum Likelihood and Bayesian Inference

(2009) Alan R. Lemmon et al.   SYSTEMATIC BIOLOGY

Sparse Supermatrices for Phylogenetic Inference: Taxonomy, Alignment, Rogue Taxa, and the Phylogeny of Living Turtles

(2009) Robert C. Thomson et al.   SYSTEMATIC BIOLOGY

Phyutility: a phyloinformatics tool for trees, alignments and molecular data

(2008) S. A. Smith et al.   BIOINFORMATICS

Phylogeny of Cyperaceae Based on DNA Sequence Data: Current Progress and Future Prospects

(2008) A. Muthama Muasya et al.   BOTANICAL REVIEW

Phylogeny, Species Richness, and Ecological Specialization in Cyperaceae Tribe Cariceae

(2008) Marcia J. Waterway et al.   BOTANICAL REVIEW

Phylogeny and Evolution in Cariceae (Cyperaceae): Current Knowledge and Future Directions

(2008) Julian R. Starr et al.   BOTANICAL REVIEW

A Preliminary Molecular Phylogeny of the Rhynchosporeae (Cyperaceae)

(2008) Wm. Wayt Thomas et al.   BOTANICAL REVIEW

A likelihood look at the supermatrix–supertree controversy

(2008) Fengrong Ren et al.   GENE

High tropical net diversification drives the New World latitudinal gradient in palm (Arecaceae) species richness

(2008) Jens-Christian Svenning et al.   JOURNAL OF BIOGEOGRAPHY

Rates of Molecular Evolution Are Linked to Life History in Flowering Plants

(2008) S. A. Smith et al.   SCIENCE